Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1209 ATGGTGGAAAGTGATGAACAAAAACGAAGCCCCGTGATCCGAAAGAAAACAGCGATGAATAGCCAAAACATGGTGTCACTTATAAGTCCGAGGTTTAAATCTGCTGCTGCTATGGCTGGTTGGGATGAAGAAGCACTTTTCCTTGCAACTCTCATTGTTGAAGACACACCTGATAGAGATTCCAAACAGAAGAAGCGTTTTGTTTTGAATTCGAAATCTCCACTCTCCAATTCATCAAGGAAACGCAGAGCTAGGAATCCACCGCAACCAATTGTTCTGGATCTTGATGAAGATGAAACCCCCAAAAAGGATAGTGGGAAAAAGAAGAAAGAAAAGAAAAATTGTGTGAATGAAGGAAGTAAAGTGGGAGAAAAGGATTTGACTCAGAAGGGATCTGATGTCAATTCTACTAGTTCTGTTCTTCCTTGTATGGATAAGCTAAGAGAAGAGCTTTCCTGTGCAATTTGTTTAGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTTTGTAAAAAATGTCTGAGATCTGCTGCAGACAAGTGTGGCAAAAAGTGTCCCAAATGCAGGCAATTGATAAGCAATGGACGATCATGCACCGTGAACACGGTTCTGTGGAACACAATTCAGCTCCTATTTCCTCAAGAAATTGAAGCAAGGAAAGTTGCCGCTAGCACCTTAAATAATAGACAAGCAACTCAGAATCCAATTCCAGAAACAGCATTTTACAATAACCAAAGGAATAGAAGCATTCAGCCATATCCATCAAGTAGGGGTATGAATTCTAGGAGAAGCGAGACAATAACACTGGATGATGAGGATGCTGAATTGGCTAGAAGGTTACAGAGAGAAATTGATGGACAAAACAACTACCATAGAACAACGGCAACAACGAGGATTCATAGTAATTCAAGGAATCAAACCTCATCATCATCATCATCATCAACAAGTGTAAGAGGGAGGACAAGAAGAGGGGTTTCAGGCCAAGATGAAGATGCTGCATTTGCTCTAAGGTTGCAAAGAGAGGAGTTTATGCAAGCTTTTACGAGTAGAAGCCAGGAACAATCATCTTCCTCCACATTATTAGCTAGACCAAATTTGAGGGCCATGGCAACTAGGGCGATGGATCTTCGTGTTAGAGGTCGAAGGATGTAA 1161 0.4143 MVESDEQKRSPVIRKKTAMNSQNMVSLISPRFKSAAAMAGWDEEALFLATLIVEDTPDRDSKQKKRFVLNSKSPLSNSSRKRRARNPPQPIVLDLDEDETPKKDSGKKKKEKKNCVNEGSKVGEKDLTQKGSDVNSTSSVLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEARKVAASTLNNRQATQNPIPETAFYNNQRNRSIQPYPSSRGMNSRRSETITLDDEDAELARRLQREIDGQNNYHRTTATTRIHSNSRNQTSSSSSSSTSVRGRTRRGVSGQDEDAAFALRLQREEFMQAFTSRSQEQSSSSTLLARPNLRAMATRAMDLRVRGRRM* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1209 386 MobiDBLite consensus disorder prediction 68 84 - -
Mal3g1209 386 ProSitePatterns Zinc finger RING-type signature. 168 177 IPR017907 -
Mal3g1209 386 MobiDBLite consensus disorder prediction 95 120 - -
Mal3g1209 386 MobiDBLite consensus disorder prediction 1 25 - -
Mal3g1209 386 SMART ring_2 153 191 IPR001841 -
Mal3g1209 386 MobiDBLite consensus disorder prediction 267 289 - -
Mal3g1209 386 SUPERFAMILY RING/U-box 145 216 - -
Mal3g1209 386 Pfam Zinc finger, C3HC4 type (RING finger) 153 191 IPR018957 GO:0046872
Mal3g1209 386 MobiDBLite consensus disorder prediction 58 120 - -
Mal3g1209 386 MobiDBLite consensus disorder prediction 290 325 - -
Mal3g1209 386 PANTHER - 13 246 - -
Mal3g1209 386 PANTHER UNCHARACTERIZED 13 246 - -
Mal3g1209 386 ProSiteProfiles Zinc finger RING-type profile. 153 192 IPR001841 -
Mal3g1209 386 MobiDBLite consensus disorder prediction 246 333 - -
Mal3g1209 386 MobiDBLite consensus disorder prediction 246 266 - -
Mal3g1209 386 PANTHER - 290 384 - -
Mal3g1209 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 222 IPR013083 -
Mal3g1209 386 PANTHER UNCHARACTERIZED 290 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1209 Mal-Chr3 51557888 51560040 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1209 127 205 RAD5 or RAD16-like Gene Family AT5G22750 34.146 1.52e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1209 - - gmx:102666585 420.239