Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1200 ATGGAACTAGATCCCAATTTTGCAGAAAAATTTCCTTATTTTTCTAGGGATTTTCCTAAAAAACCTTGCATAAAATCAAAGATCCCCACAATGGTTCCCTCTCAACTAAGGTCAACTATTTCACCTCCACCGTCACATTACACCACCTATTTGTGCCAAAATCCTTGCAATCAATTTAAGGAGCATCCTTTGAATGGGTCTGACCATCAATCTAGGTTTTGTACAATGGTTCCTTCATCTAGAGACTCAATTTATGTGAACCCAACCCCTTCATACATGATTTCACACAACAATGGATCCCAGAGAGAACTTCTCAGTGCTCGAAATCCAATGATCTTTGCACCAACCAGTAACAAAATAGAATCCACAAATGGTCGCCTAAACACTAGCAAAGGAATTTGGGATTTGTCCAAAAAAAATATCTTTGAATATGGTGAAACTTCACAACATCAGGTCAGTCCCGCTCTATCACCACTACCAGTTTATGATACATATCTATCTCTGTCAGTTAAACCTGAAATTGAAGGCGATCTTTCTTCCAATGGTTGTATTGGAAACATACCCCGAGAAAATGATCAAGGACATGTTCCTAGTGTACGGATGCGGCATGAGAGGATTCAGAAGAATAATGAGATTCAAAACAAGGATCTCAATATAATCAAAGGCCAATGGACCGCAAATGAGGACAGGATTCTTGTCCACTTGGTTGATCGCTTTGGGCTTGGAAAATGGTCCAAGATTGCTAAGTATATGAATGGTAGGATTGGCAAACAGTGCAGGGAGAGATGGAATAACCATCTTTGTCCAGACATTAAGCGGAAGGAGTCATGGACTGAAGAGGAGGACATGATATTGATTGAAGCTCACAAGATAGTTGGAAACAAGTGGGCTGAAATAGCAAGGAGATTGCCAGGGCGCACTGAGAACTCTGTTAAGAACCACTGGAATGCCACCAAGCGTCGCCAGAACGCTAAGAGGAAGAACCAGGGTAAAAGTTCAAAAAGTTCACTACTTCTGAAATACATAATGGAAGTCACTTCGACTAAGGAAGTTGAAAATAAGTTGATGAAGAATTCATTAAGCATGATGAATTTAGGGAATCATTCAAATTTTGAAAGTTCTCAAAGTGATTTTAGCTCTGAAGGTTTGACTACTTCAAAGGAAGAAATTGATGGCTATGTGCCAATGATGTTCAATGGTGATGATGGAATGGCAAGTGGATCTGGTACCACAATGAATAATGAGTTTGGATCATATGGAATGAAGTTTTTTTTCTGA 1278 0.3944 MELDPNFAEKFPYFSRDFPKKPCIKSKIPTMVPSQLRSTISPPPSHYTTYLCQNPCNQFKEHPLNGSDHQSRFCTMVPSSRDSIYVNPTPSYMISHNNGSQRELLSARNPMIFAPTSNKIESTNGRLNTSKGIWDLSKKNIFEYGETSQHQVSPALSPLPVYDTYLSLSVKPEIEGDLSSNGCIGNIPRENDQGHVPSVRMRHERIQKNNEIQNKDLNIIKGQWTANEDRILVHLVDRFGLGKWSKIAKYMNGRIGKQCRERWNNHLCPDIKRKESWTEEEDMILIEAHKIVGNKWAEIARRLPGRTENSVKNHWNATKRRQNAKRKNQGKSSKSSLLLKYIMEVTSTKEVENKLMKNSLSMMNLGNHSNFESSQSDFSSEGLTTSKEEIDGYVPMMFNGDDGMASGSGTTMNNEFGSYGMKFFF* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1200 425 ProSiteProfiles SANT domain profile. 272 323 IPR017884 -
Mal3g1200 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 272 323 IPR017930 -
Mal3g1200 425 PANTHER MYB PROTEIN-RELATED 198 365 - -
Mal3g1200 425 SMART sant 220 269 IPR001005 -
Mal3g1200 425 SMART sant 273 321 IPR001005 -
Mal3g1200 425 MobiDBLite consensus disorder prediction 313 333 - -
Mal3g1200 425 ProSiteProfiles Myb-like domain profile. 273 319 IPR001005 -
Mal3g1200 425 Gene3D - 275 338 - -
Mal3g1200 425 CDD SANT 276 319 IPR001005 -
Mal3g1200 425 SUPERFAMILY Homeodomain-like 218 315 IPR009057 -
Mal3g1200 425 CDD SANT 224 267 IPR001005 -
Mal3g1200 425 ProSiteProfiles Myb-like domain profile. 216 267 IPR001005 -
Mal3g1200 425 Gene3D - 220 272 - -
Mal3g1200 425 Pfam Myb-like DNA-binding domain 274 316 IPR001005 -
Mal3g1200 425 Pfam Myb-like DNA-binding domain 221 267 IPR001005 -
Mal3g1200 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 216 271 IPR017930 -
Mal3g1200 425 PANTHER MYB DOMAIN PROTEIN 100-RELATED 198 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1200 Mal-Chr3 50876380 50878461 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1200 213 342 MYB Transcription Factor Family AT4G18770 66.923 3.64e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal3g1200 Myb_DNA-binding 4.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1200 K09422 - mtr:MTR_4g088015 548.125