Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1169 ATGGGTAGAAAGAAGTTGCAACTTGCATATATAACATGTAATTCAAAGAGGAGGGAAACATTCAAAAAGAGGAAAAGTGGTATAATGAAGAAAGTTAATGAAATCAGCATCCTTTGTGGGATCGAAGCATGCGCAATAATCTATGATGAAAACGATCCTCAAGCAGAGGTTTGGCCATCAGATTCAGGAGTTAAAAGCGTGTTGTCTAGGTTTGGGAGTTATCCTGAACTGGAACGAAGCAAAAAGATGGTGGACCAAGAGGCTTTCTTGAGGCAAAGCATAACGAAAGCCTACGAGCAACTGAAGAAACAAAGAGAGGAAACCAGGAAGAGCGAAATGGCCAAAATCATTGATCGTTACATTCATAGCGGAGAATTTAATATCAATTTAATGAGAAAACATGATATCAATGATTTATCGTCTTTTATTGATTATAATCTAAAGGAGATCAACCGAAAGATGAAAGGAATGCAAATCGAATCCCAAGAGGAGGTCGGACATGGAGGTGAAGTGAATGGAACAGGAGATCAGGAAAATACTAGTCATGTCCAAGGGCTGGTGAGTGGAGGAATGGAGACCAACATGGGTGATGATATGCAATTTAATTTTCAACATTGGCCGATGGATTTATCAATGCTACAATTTCCAGATGTTAATGACGACAAAAAAGACTTTTAG 678 0.3864 MGRKKLQLAYITCNSKRRETFKKRKSGIMKKVNEISILCGIEACAIIYDENDPQAEVWPSDSGVKSVLSRFGSYPELERSKKMVDQEAFLRQSITKAYEQLKKQREETRKSEMAKIIDRYIHSGEFNINLMRKHDINDLSSFIDYNLKEINRKMKGMQIESQEEVGHGGEVNGTGDQENTSHVQGLVSGGMETNMGDDMQFNFQHWPMDLSMLQFPDVNDDKKDF* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1169 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Mal3g1169 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal3g1169 225 Coils Coil 91 111 - -
Mal3g1169 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal3g1169 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal3g1169 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal3g1169 225 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Mal3g1169 225 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Mal3g1169 225 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 163 - -
Mal3g1169 225 Gene3D - 14 99 IPR036879 GO:0003677|GO:0046983
Mal3g1169 225 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal3g1169 225 PANTHER MADS BOX PROTEIN 3 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1169 Mal-Chr3 48676968 48677926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1169 1 216 Type I MADS-box Gene Family AT5G48670 41.593 7.57e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal3g1169 SRF-TF 2.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1169 - - cam:101496969 270.396