LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal3g1109	ATGAGTTCCAAAATCAGCAGCCCAGCACAGGTTATACTTTTCATCATATCATGTTTATGTTCTCACACAATTTCAGACCCAAGAATCTCAGAAGCTGGACTCTACTGTGGTAAAGACAAAGCACCACCAAAATCAAACTTCATCCCAAGTTTCATAAAAGAAATGGAGAATCTCTCACAGCTTGTTACTGATCATAATTGGGGAACTCAATATATCAATATCTCAGGATCTGTTCCAATCTATGGCTTTGCACAATGTTTTAAAGATCTCTCTCATACTGATTGTCTTCTTTGCTATGCTGCCAGCCGCACTAAGCTCCCTCGTTGCCTTCCTTCGCTCTCCGCTCGCATCTATCTTGATGGTTGCTTCCTTCGTTACGACAATTATAGTTTCTACTCAGAGGAAACTGACCCTTTGAGGGACAGTGTTATCTGCACCTCCTCTGAGAGGTTGGAGGTGCAGATTGAAAATAGTGTTAGAAGAGTGATTGATGTTGTGGCCAAGGATGCCTCTAGTGGTGGATTTGCTGTTGGAGAAGTTGAGGGTGTTTATGGCTTAGCACAATGCTGGAACACTCTTGGGATTTATGGATGTAGAGGTTGCTTGAGGAATGCTGTGAAAAAGGTTAGAGGGTGTTTGCCAAATAGTGAAGGTAGGGCCTTGAATGCTGGTTGTTATTTGAGATATTCAATACACAAGTTTTTCAATGAAGGGGGTGGAACAGATGGTGGAAATGAATCTTTAAGTAGAAGAGCTGTAATAGCTGGAGTGTTAGCAACAGCTGCAATAATTATGCTTGCTCTCTGTGCCTCTTTTGCAGTCTTTAAAAAGTTGTCAAATCTAAAAAAAGAAAAAATTAATCAGGACCAGATTCCATCTTCCATAACAAAATCTAGCTTGAATTACAAATACGAAATGCTCGAGAAGGCAACAGATTATTTCAACTCTTCCAGGAAACTAGGCCAAGGAGGATCAGGTTCGGTTTTCAAAGGTATTCTTCCTAATGGAAATGTTGTTGCAGTAAAGAGATTGGTATTCAATAATAGGCAATGGGTGGATGAGTTCTTTAATGAAGTAGATTTGATTAGTGGAATTGAACACAAGAACCTTGTCAAACTATTGGGGTGTAGCATTGAAGGACCTGAGAGCCTACTTGTATATGAGTACTTACCCAACAAGAGTTTAGATCAATTTATCTTTGAAAAGAGCAGAGCTCAAATTCTAAATTGGAAGCAGCGATTTAACATTATTCATGGAACAGCAGAAGGGCTTGCTTATCTTCATCAAGGTTCTATTAAAAGAATCATCCATAGAGATATCAAAAGTAGCAATGTTCTTCTGGATGATAATCTCTCTCCTAAGATTGCAGATTTCGGTCTTGCGCGCTGTTTTGCTGCTGATAAAACACATTTGAGTACTGGAATTGCTGGAACACTTGGTTACATGGCTCCGGAGTACCTAATTCGAGGACAACTGACAGATAAAGCTGATGTCTATAGTTTTGGAGTACTTGTTCTAGAGATTGTATGTGGCAGAAGAAATAATGTCATCAGAGAGGACTCTGGATCACTTCTACAAACTGTTTGGAAACATTACCGGTCAAACACATTAGTTGAAACTATTGATTATAGCTTAGGAGATGATATTCCTGAAGCTGATGCATCAAGGGTGTTACACATTGGCTTGCTTTGCACACAAGCTTCTGCTTCCCTTAGACCATCCATGGTCCAAGTTGTTAAAATGTTAAGTAATTCAAATTTAGATGTTCCTACACCAAATCAACCACCATTTTTGAACACTGCAATTTTAGACTCAGACAGCTCCATTAGATCTTATAGCACAAACAGCTTTGTTTCTAATGCGTTAAAAAAGATTGGAGTTTCTTACAGCTACTCAGAGTCCACTTGTTCCCGCCACTCGGACGAGCCATCAAGAAGTGAAGAATCAACTATCCAAGCTTGA	1962	0.3955	MSSKISSPAQVILFIISCLCSHTISDPRISEAGLYCGKDKAPPKSNFIPSFIKEMENLSQLVTDHNWGTQYINISGSVPIYGFAQCFKDLSHTDCLLCYAASRTKLPRCLPSLSARIYLDGCFLRYDNYSFYSEETDPLRDSVICTSSERLEVQIENSVRRVIDVVAKDASSGGFAVGEVEGVYGLAQCWNTLGIYGCRGCLRNAVKKVRGCLPNSEGRALNAGCYLRYSIHKFFNEGGGTDGGNESLSRRAVIAGVLATAAIIMLALCASFAVFKKLSNLKKEKINQDQIPSSITKSSLNYKYEMLEKATDYFNSSRKLGQGGSGSVFKGILPNGNVVAVKRLVFNNRQWVDEFFNEVDLISGIEHKNLVKLLGCSIEGPESLLVYEYLPNKSLDQFIFEKSRAQILNWKQRFNIIHGTAEGLAYLHQGSIKRIIHRDIKSSNVLLDDNLSPKIADFGLARCFAADKTHLSTGIAGTLGYMAPEYLIRGQLTDKADVYSFGVLVLEIVCGRRNNVIREDSGSLLQTVWKHYRSNTLVETIDYSLGDDIPEADASRVLHIGLLCTQASASLRPSMVQVVKMLSNSNLDVPTPNQPPFLNTAILDSDSSIRSYSTNSFVSNALKKIGVSYSYSESTCSRHSDEPSRSEESTIQA*	654

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal3g1109	653	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	16	646	-	-
	Mal3g1109	653	Gene3D	Phosphorylase Kinase; domain 1	274	389	-	-
	Mal3g1109	653	ProSiteProfiles	Protein kinase domain profile.	314	598	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mal3g1109	653	SMART	serkin_6	314	582	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mal3g1109	653	MobiDBLite	consensus disorder prediction	634	653	-	-
	Mal3g1109	653	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42	16	646	-	-
	Mal3g1109	653	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	18	-	-
	Mal3g1109	653	CDD	STKc_IRAK	320	582	-	-
	Mal3g1109	653	SUPERFAMILY	Protein kinase-like (PK-like)	297	613	IPR011009	-
	Mal3g1109	653	ProSiteProfiles	Gnk2-homologous domain profile.	29	131	IPR002902	-
	Mal3g1109	653	Pfam	Protein tyrosine and serine/threonine kinase	316	582	IPR001245	GO:0004672\|GO:0006468
	Mal3g1109	653	Pfam	Salt stress response/antifungal	157	230	IPR002902	-
	Mal3g1109	653	Pfam	Salt stress response/antifungal	43	129	IPR002902	-
	Mal3g1109	653	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	435	447	IPR008271	GO:0004672\|GO:0006468
	Mal3g1109	653	Gene3D	-	145	234	IPR038408	-
	Mal3g1109	653	Gene3D	-	32	131	IPR038408	-
	Mal3g1109	653	Gene3D	Transferase(Phosphotransferase) domain 1	390	591	-	-
	Mal3g1109	653	ProSiteProfiles	Gnk2-homologous domain profile.	137	234	IPR002902	-
	Mal3g1109	653	ProSitePatterns	Protein kinases ATP-binding region signature.	320	342	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal3g1109	Mal-Chr3	45166201	45170394	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal3g1109	14	479	Receptor kinase-like Gene Family	AT5G40380	56.103	0.0	526

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Mal3g1109		PK_Tyr_Ser-Thr	4.2e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal3g1109	-		-	gmx:100790404	988.023