Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1061 ATGGCATCTTCAAGCGCCTACTCAAATTCACCATGTGCTGCGTGCAAGTTTTTGAGAAGGAAGTGCATGCCAGATTGCATATTTGCTCCATATTTCCCACCAGAAGAGCCACAAAAATTTGCAAATGTTCACAAAATATTTGGTGCAAGCAATGTGAGTAAACTTCTAAATGAAGTACAGCCACATCAAAGAGAAGATGCAGTCAACTCTCTTGCCTATGAAGCTGAGGCAAGGATTAAAGATCCAGTTTATGGTTGTGTTGGTGCCATTTCAGTCCTCCAAAGACAAGTTATTAGGCTCCAAAAGGAACTTGATTCTACTAATGCCGATTTGATTCGCTATTCGACTTGCACCGAAATTCCAAATCATGATATTGCAGCTACAAGAATTGGTGGTGAAGATGGAGGTGGTTCTTCTCTTGGTCAATCTCCTCCTCCATCTTTTTACTATCCTTCTCCTTGGAACAATAATGATCCACTTGGGGATGGTTATCACACAGGAGGAGGTGACAATATATAA 519 0.4104 MASSSAYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDSTNADLIRYSTCTEIPNHDIAATRIGGEDGGGSSLGQSPPPSFYYPSPWNNNDPLGDGYHTGGGDNI* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1061 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 4 161 - -
Mal3g1061 172 Coils Coil 90 110 - -
Mal3g1061 172 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Mal3g1061 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 161 - -
Mal3g1061 172 MobiDBLite consensus disorder prediction 127 172 - -
Mal3g1061 172 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1061 Mal-Chr3 42964875 42965393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1061 5 117 AS2 family AT3G27650 84.071 1.11e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mal3g1061 LOB 9.5e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1061 - - var:108328620 270.781