Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1040 ATGAGATATATTTATCTCAATATTATGGTTCTTTCATTGTTTTTCTCCATTCATAGTACTCATGAGCTACAATTTGCTCACACTCAAGTTCTGTTACAGTTAAGGAAATATCTTGAATACCCTTCCTCTTTGCAAATTTTGGAGAATTACTATTTAGACTTTTGTAGTATTCCTCCATCTGAACATTTGAGCATTAAATGTGAGTGCAATTCAGTAACTGAGCTCAAAATCATGGGGGACAATCATAAACCTGTAAAGGCTGAAAGTTTCAATGGATTTGCAATTTTCAATCAAACACTATCCAAAAGTTTCTCTATTGATTCTTTTGTCACAACATTGACAAGGTTAACAAGTTTAAAGGTCCTTAGTTTGGTTTCTTTGGGAATTTGGGGCCCACTTCCTGATAAAATTCATAGGCTATCTTTGCTTCAAGTTTTGGATTTGAGTTCAAATTTCTTATTTGGTTCTATTCCACCAAAGATAGACACATTGGTGAATCTTCAAATTCTAACACTTGATGGAAATTATTTTAACACCACAATGCCTAATTTTTTTGAACCTTTGTCTAATCTAAGTATCTTTAGTTTGAAAAACAATTACTTAAAAGGTTCATTCCCTTTTTCACTATGCAAAATCAAAACTCTTACTTATATTTCCTTGTCACACAATGAACTATCTGGTGCATTGCCTAATCTCACCACACTTTTTGGTTTACATGTTTTGGATTTAAGAGAAAATAGTTTTAATTCCGAGTTACCGTTGATGCCGAAATCGGTTGTCACGGTATTGCTAAGTAAAAACTCCTTCTCAGGTGAGATTCCTATTAAGTTTGGTGAACTGAATCAGCTTCAACATCTTGATCTTTCGTCGAATCGTCTTAGCGGGGTTCCTCCGTCTTCTTTGTTCTCTTTGACAAACATAAGTTATTTGAATTTAGCAAAAAATGTGCTAAGTGGTTCAATTCCAGAGAAACTAAAATGTGGAAGCAAACTTGGGTTTGTGGATATTTCTAGTAACATGTTAAGTGGTTTACTTCCTTCTTGTTTGGAAAGTACTTCTGATAGAAGAATTGTTAGATTTGGTGGAAACTGTTTATCTGTTAATTCTCAACCTCAGAATCATAAACATGGTTCTTATTGTAAAGAATTTAGTTCAGGAAAGATGAAATTTTGGAGATGGGAAATTGATGCTGCAATTGCTATCATTGTTGTAGTTTTTCTTTTGCTGCTAGCTTTTGGAGTTTTGTTTTACAGAAAGTGTCATTCAAAAGAGGTTTATAGGCATGAGATGTTGCCAAAGATTGTTCAAGATAATAACTCTACAAGAGGAGTTTCCTCTGAACTCCTTGCTAGTGCAAGATATATTTCTCAAACAATGAAGCTAGGGACACAAGCTACTCCAACTTGTAGACACTTTTCAATTGAAGAGTTGAAGGAAATTACAAGAAACTTTAATTTGTCAACTTACATTGGTGAAGGATCTGTAGGAAAGCTGTACAAAGGTAAACTAGAGAATGGATCTTATGTGATGATTAGAACATTGACTCTGAGAAAAAAGTTCTCAAGACAAAATCTCAAAGCTAGGTTGGATTTACTCTCAAAGCTTCACCATCCAAATTTGGTTAGTCTTTTGGGTCATTGTATAGATGGTAGTGAAAAAGATGTTGGTAGTACCCACAAACTTCATCTTGTTTACGAGTACGTGCAAAATGGCGATTATCGTACCCATTTGAGAGAATTTTCACAGGATAAGGCACTAAAATGGTCTGAGAGATTGGCAATTTTAATTGGAGTAGCCAAGGCTGTGCATTTTTTACATACTGGAATTATACCAGGTTGTTTCAGAAACAATTTAAAGACAAACAATGTTTTACTTGACGAACATCGTTTTCCCAAACTAAGTGACTATGGTGTGTCTTTGATCGCCGAAGAGATCGAAAACATTCAGGCAAAGGGAGAGAATCCAAAATCTTGCAAAAGGGAAGAATTGGAGGATGATGTTTACAATTTTGGATTCATATTATTTGAATCACTTGCTGGACCCATAGCAAGTGAGAAAGGAGAAGCATTTTTTCTTAATGAAAAGGCATCGTTTGATAGTCATGATGGTAGAAAAAGAATTGTAGATCCAGTAGTGTTGACAACTTGCTGTCAGGAGTCTTTATCAATTGCAATATCAATCACAACCAAATGCATATCTCCACAATCTTCATCTCGTCCTTCTTTTGAAGATGTTCTCTGGAATTTACAATATGCAGCTCAAGTCCAAGCAGATGCAGATGCAGATTCTATATCATAG 2298 0.3481 MRYIYLNIMVLSLFFSIHSTHELQFAHTQVLLQLRKYLEYPSSLQILENYYLDFCSIPPSEHLSIKCECNSVTELKIMGDNHKPVKAESFNGFAIFNQTLSKSFSIDSFVTTLTRLTSLKVLSLVSLGIWGPLPDKIHRLSLLQVLDLSSNFLFGSIPPKIDTLVNLQILTLDGNYFNTTMPNFFEPLSNLSIFSLKNNYLKGSFPFSLCKIKTLTYISLSHNELSGALPNLTTLFGLHVLDLRENSFNSELPLMPKSVVTVLLSKNSFSGEIPIKFGELNQLQHLDLSSNRLSGVPPSSLFSLTNISYLNLAKNVLSGSIPEKLKCGSKLGFVDISSNMLSGLLPSCLESTSDRRIVRFGGNCLSVNSQPQNHKHGSYCKEFSSGKMKFWRWEIDAAIAIIVVVFLLLLAFGVLFYRKCHSKEVYRHEMLPKIVQDNNSTRGVSSELLASARYISQTMKLGTQATPTCRHFSIEELKEITRNFNLSTYIGEGSVGKLYKGKLENGSYVMIRTLTLRKKFSRQNLKARLDLLSKLHHPNLVSLLGHCIDGSEKDVGSTHKLHLVYEYVQNGDYRTHLREFSQDKALKWSERLAILIGVAKAVHFLHTGIIPGCFRNNLKTNNVLLDEHRFPKLSDYGVSLIAEEIENIQAKGENPKSCKREELEDDVYNFGFILFESLAGPIASEKGEAFFLNEKASFDSHDGRKRIVDPVVLTTCCQESLSIAISITTKCISPQSSSRPSFEDVLWNLQYAAQVQADADADSIS* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1040 765 Gene3D Transferase(Phosphotransferase) domain 1 568 764 - -
Mal3g1040 765 Pfam Protein tyrosine and serine/threonine kinase 486 746 IPR001245 GO:0004672|GO:0006468
Mal3g1040 765 Pfam Leucine Rich Repeat 143 160 IPR001611 GO:0005515
Mal3g1040 765 Pfam Leucine rich repeat 166 225 IPR001611 GO:0005515
Mal3g1040 765 Pfam Leucine rich repeat 260 317 IPR001611 GO:0005515
Mal3g1040 765 Gene3D Phosphorylase Kinase; domain 1 455 567 - -
Mal3g1040 765 PRINTS Leucine-rich repeat signature 280 293 - -
Mal3g1040 765 PRINTS Leucine-rich repeat signature 215 228 - -
Mal3g1040 765 ProSiteProfiles Protein kinase domain profile. 484 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal3g1040 765 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 4 763 - -
Mal3g1040 765 ProSiteProfiles Leucine-rich repeat profile. 282 303 IPR001611 GO:0005515
Mal3g1040 765 Gene3D Ribonuclease Inhibitor 26 257 IPR032675 -
Mal3g1040 765 Gene3D Ribonuclease Inhibitor 258 384 IPR032675 -
Mal3g1040 765 PANTHER OS07G0166700 PROTEIN 4 763 IPR045272 GO:0004714|GO:0006468
Mal3g1040 765 SUPERFAMILY L domain-like 41 366 - -
Mal3g1040 765 SMART LRR_typ_2 140 163 IPR003591 -
Mal3g1040 765 SMART LRR_typ_2 280 303 IPR003591 -
Mal3g1040 765 SMART LRR_typ_2 164 187 IPR003591 -
Mal3g1040 765 SUPERFAMILY Protein kinase-like (PK-like) 464 749 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1040 Mal-Chr3 41946325 41950481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1040 6 694 Miscellaneous Gene Families AT5G14210 55.444 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Mal3g1040 PK_Tyr_Ser-Thr 1.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1040 - - gmx:100813412 1089.72