Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1021 ATGAATGAAGATCGGAAGCCAAAATTAGATATGGTTTTTGGTAGCTTTGAAGATGCTTGGAAGTTCTGGAAAATTTATGGTGGTAAAGTTGGATTTGGAGTGAGGAAACATTATACACACAGAAAAAAGGATGGTTCAGTTTCTTCTTGTAGGTTTGTTTGTTGCAAAGAGGGCATACGAAAACCAGACAAGCGAGATCATAAAACAAAGAATCCAAGGGTAGAGACCAGAACAAATTGTGAAGCAAGGTTAGGACTTAAGAATGTGGATGGAAAATTGGTGGTGCATGATTTTGTGGAGGAACATAACCACGATTTACATTTTCCAGAAACAACTCATATGTTGTCTTCTCAACGAATGGTGTCTGAAATTCAATGTCAACAAATTGAACTAGCTGATAGTGCCGGTGTACAACAGAGGAAATCATTTGATTTAATGAGTAAAGAAGTAGGAGGAAGAACTAACTTAGGTTTTATTCGTCTTGATCAAAAGAATTATCTTCGCAAGAAAAGACAAAGAGGTTTGGTCCAAGGGGAAGCCGACTATTTATTGCAATACTTTCAAAGGAAATCAGCAGAAGATCCAACATTCTACCATGCCTATCAACTAGATATTGAAGATCAGATCACCAATGTGTTTTGGGCAGATGCTAGGATGCTAATTGATTACAGCTATTTTGGCGATGTTGTTTCTCTTGATTCAACATATTGCACAAATAGTTCGCACAGACCTCTAGCAATCATCTCGGGATTTAACCACCATCGAGGAGCGAAGAAAATTCCTCAAACAGTTTTTACTGATCAAGCCCAAGCAATGGCAAATGCACTAGCTGAGGTTATGCCTGGAGCTTACCACGGTTTATGTACGTGGCACTTGATGCAGAATGGAATCAAACACTTAGGAAATTTAATGAAGGGGGGATCTTATTTTCTTACTGACTTTAAGAAATGCATGTATGGTTATGAAGATGAAGAACAATTTGAAGATGGTTGGACATCCCTCCTTGAAAAGTATGGTGTTCAAGAAAAGGATTGGTTGAAAAGAGTGTACAATATAAAGGAGAAATGGGCATCTTGTTACATGAATAAGACTTTGACAGTAGGGATGCGAAGCACTCAACTTAGTGAAAGTGTGAATGCAGATATTAAAAATTTAATGAGTAGGGACTTGAATATAATCAATTTTTTTGAGCGTTTTGCGGATGTTGTAGAAGAAAAACGGTATAAAGAATTGAAGTGTGCATTTGAAGCACGCCAAAAAATTCCAAGACAAAAGAATTCTTATTCTGATATTTTGCAACAAGTCTCTGAGCTTTACACTCCTACTATTTTCGACTTATTCCAACGTGAGTATGAGCTGTTTGAAGCATGCTTTGTGAAAAGCATGGACATACAAACATCATCATCTACTTATGTTATTGCCAGGAAAAAGAATATGGGAGAATGGAAAGTGACCTTTGATTTGGAAAAGAATACAATTTGTTGCTCTTGTCGTAAATTTGAGAGCTTTGGTATACTTTGTTGTCATTGCTTAAAAGTCTTTATTCATATGGACGTCACATCAGTGCCTGAGCCTTATATCTTAAAGAGGTGGACAAAGATAGCAAGAAGTAGAGCTTCACACACTATTGGTGTTAGTCATGTGGTAGAAGACTTGGATTTTTCTCCAAAACAATGCTATAAGGAAATTTGTCCTCGCTTTATTAGGATAGTCACAGAAGGATGTAGAAGTCCAGAAACAGTTGAGTTTCTTAAGGAAGTTGCTGATGAATTGGATGAGCAAATGCTAAAGTTTCAAAATATGCAAATAAGTATTGGACAAGTGAATGGAACCTCTGACAATATTGAAGAGATATCAAGTACTAATGATGGTTCAACAAAAGTAAAGGGGTTTAAGATAAAAGAAGGTCCAAAGGGTTCAAAACGTTGGAAAGGATGGGTAGAGATCAAACTAGCAAAGAGAAAGAAACATGTTGAATGCATTGCTTCACAAATTCAAGAACCTACGAGCTTCACAGAGTCAACACTAGTGATTTACAAACTAAAAAATGCATATGCATCGCCAAATACAAGTGCACCTACATGGCTTAATAATGCATACGATCAACCATCTATGGGAAACAATGGAACTTCTAGTCAATTTGGTGTCACTAGTTTTAGTAGCTTATTGATGGAGCAACTTGATGATCGTACCAGAGACTTGAATGGAGGCTCATAA 2217 0.369 MNEDRKPKLDMVFGSFEDAWKFWKIYGGKVGFGVRKHYTHRKKDGSVSSCRFVCCKEGIRKPDKRDHKTKNPRVETRTNCEARLGLKNVDGKLVVHDFVEEHNHDLHFPETTHMLSSQRMVSEIQCQQIELADSAGVQQRKSFDLMSKEVGGRTNLGFIRLDQKNYLRKKRQRGLVQGEADYLLQYFQRKSAEDPTFYHAYQLDIEDQITNVFWADARMLIDYSYFGDVVSLDSTYCTNSSHRPLAIISGFNHHRGAKKIPQTVFTDQAQAMANALAEVMPGAYHGLCTWHLMQNGIKHLGNLMKGGSYFLTDFKKCMYGYEDEEQFEDGWTSLLEKYGVQEKDWLKRVYNIKEKWASCYMNKTLTVGMRSTQLSESVNADIKNLMSRDLNIINFFERFADVVEEKRYKELKCAFEARQKIPRQKNSYSDILQQVSELYTPTIFDLFQREYELFEACFVKSMDIQTSSSTYVIARKKNMGEWKVTFDLEKNTICCSCRKFESFGILCCHCLKVFIHMDVTSVPEPYILKRWTKIARSRASHTIGVSHVVEDLDFSPKQCYKEICPRFIRIVTEGCRSPETVEFLKEVADELDEQMLKFQNMQISIGQVNGTSDNIEEISSTNDGSTKVKGFKIKEGPKGSKRWKGWVEIKLAKRKKHVECIASQIQEPTSFTESTLVIYKLKNAYASPNTSAPTWLNNAYDQPSMGNNGTSSQFGVTSFSSLLMEQLDDRTRDLNGGS* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1021 738 PANTHER OS03G0181600 PROTEIN 5 255 - -
Mal3g1021 738 PANTHER OS03G0181600 PROTEIN 258 604 - -
Mal3g1021 738 ProSiteProfiles Zinc finger SWIM-type profile. 482 518 IPR007527 GO:0008270
Mal3g1021 738 SMART 26again6 493 520 IPR006564 GO:0008270
Mal3g1021 738 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 5 255 IPR031052 GO:0006355
Mal3g1021 738 Coils Coil 581 601 - -
Mal3g1021 738 Pfam SWIM zinc finger 483 516 IPR007527 GO:0008270
Mal3g1021 738 Pfam MULE transposase domain 259 295 IPR018289 -
Mal3g1021 738 Pfam FAR1 DNA-binding domain 21 106 IPR004330 -
Mal3g1021 738 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 258 604 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1021 Mal-Chr3 41615945 41618543 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mal3g1021 FAR1 5.4e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1021 - - ccaj:109815076 875.93