Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0991 ATGTGGTATGGTCCTCCATACCAGTCCAATGATGAACTCTCTTTTGATTCTGATGAAAGTGAAGACAATGAGACTAGTGATGAGAATTTTAGAGTTGATGAGCTGAATAAGATTTCTGACAATGATGATGATAGTTCTTCTGGCTCTCCTTATGATGATGGTAAGGAGGAGAATAAAAAGGATTTGGCAAGAGAGGTGAATGATAGAAACAGTGGAATTTCTGAGATGAACAATGAGGAGGTGAAGGATAAAGGTCCTTCTGTAAATAATGATGAAGTGGAGCATTCAGATTATGGTAGTGTAGCAACCTATACTACCTTTGAGAAGAATGGTTCTTTTGATTCAATGAAGGGTTCTTCTTCAAACAAGAATGAAACATCAAAGAAACAAAAAGCAAAAAGTGTGGAAAATGTCTCAGATGAAAGGGCTAAAGCTAAACCTAATGAAAGTGTGAATCTTCGTGATGATGTTAATGTTGCCAAAACCAAATGCAAAGTTGAAGCCAAAGACAATGCCAAACCTAATGAAAGTCATGTCAAAGGTTTAGATGTTAGGGGAGTTACTTTGGTTCAAACAAAGCAAGAAACGATGAAGGAATCACATAAACAGAAATTGATGCAGAATAATGGAAGGGATTATAGAGATAGAGCTAACATTCATAATGAGAAGAAGGAATCTATTGATAACAATGGTTTGAATCGAAGGGTAAAAAGTACACACTTTATGCGAAACGAGTTGCTCCTTGCTAAATGCTATTTGGACAGAAAGAATACCATGAAGAATGATTCAATTGTGTTCGAGTTCAATGAGGATGGCGTTGATAGACGAGATACACGGCCACCACCAGTTTCTGTTAAGACACCCCCATCGATATGGAGCCTTAAAAAGGTGGAAAAAGTGCAAAAGACCAAGGAGGAGGAGGAGAACGAAGCGTTATGGAATGAATTGGATATAACCCTTAGAGAATCCGACGCTGTATCCATGATTGGAAATTTAGGGACAAATGAAGCTACAAAAATAAACAGTCGAAGTCCATCATCTCGATGTGAACACGACACTTTTCTCGACGAAGAGATTGGTGTATATTGCAAATTGTGTGGTGTGGTTATTACCGAGATCAAATATATCTCACCACTAGTGATTGATAGATTTCCCTTTGAAGGTTCAGGAAAAAAGGCATCATTTGATGGAATAAATACTTCACTGTTTGATGAATCTCAATTCAATGTTTCTGATAATGATCCAGAGACTAATTTCTCTCGCAATGAAGGCACAGTTTGGGGCCTAATTCCAGATTTGAAACAAACTTTATATCCTCATCAACAAGAAGGCTTTGAATTCATTTGGAAAAACTTGGCAGGAAGCGTCAAGCTTCAAAAGTTAAAGAATGCCGATCCTTGCAGCGAAGGGGGCTGCATTATTTCTCATGCTCCTGGAACCGGAAAGACAAGGCTAGTGTTTCTCAAGGCATATTTGAAAGCCTTTCCAAAATGCTTGCCGATTATTGTCGCTCCTGCTAGTTTACTTCTAACTTGGGAAGATGAATTCAAGAAATGGGACATTGGAGTTCCATTTTACAATTTAAGCAATCCCGAGTTATCTGGTAAAGAGCATGCTGATGCGGTTGAAACATTCGATAGGTCTAATACACAACATGGTATTGATGAAACACATGGTGAAATTGATTTCGTGGTTCAAAGAAACAAGCTGTTGAGAGAAGAAAACTGTGATATGCGAAAGGTTCTACTTAAAGCTCCTGGTTTGTTAGTTCTAGATGAAGGACACACACCAAGAAATCAAAGAAGTCATATTTGGAAAGTGTTGTCGAAGATTCAAACGCAGAAGCGAATCATCCTTTCCGGAACTCCATTCCTGAACAATTTCTTGGAGCTTTACAACACCTTAAGCTTAGTGAAGCGTTCTTTTCCTAACACGATACCGCCTGAGCTAAAAAGTTTTTGCCATAAGCAGGGACATAAATCATCTAAAAAGCGGAGTTGTGAACCTGTTTCGGGCAACACAACAAGAGACCCTTCTGATGATAAGATCAAGAAGTTGAAATTGCTAATGGATCCCTTTGTTCATGTTCACAAAGGTGCGATCCTTGAAAATAAGCTTCCCGGGTTAAGGGACTGTTTGGTGACTTTGAAGGCAGATAGTTTGCAGAACGAAATTCTGAAGAGCATTAAACGTTCTCAGAACACATTATTTAACTTTGAGCGTAAGATAGCATTGACATCCGTCCATCCATCTCTTTTCCTTGAATGCGCTCTTACGAAAAAAGAAGAATCCGTTCTTGACAAGGATCAGTTGGAAAAGCTTAGAATGAACCCACATGAAGGTGTCAAAACAAAATTTTTGTTCGAGTTTGTTCGTCTGTGTGATGCTCTTCACGAGAGAGTTCTTGTGTTCAGCCAATTCCACGCTCCTTTGCAATTAATTAAAGACCAATTAAACTCATCTTTTAAATGGTCTGAGGGAAAGGAAGTGCTGTTCATGTCTGGCGAAGATCCTCCAAAGGTTAAGCAGTCGCTAATACATAGCTTCAACGATGCAAATTGCCAAGCGAAGGTTCTACTTGCAGCTACAAAAGCTTTTTCCGAGCGAATTAACTTAGTTGGAGCTTCAAGGGTTGTGCTTCTTGATGTAGTATGGAATCCTTCGGTCGAAAGACAGGCTATCAGCCGAGCGTACACGATTGGACAGAAGAGAGTGGTATACACATACCATCTGCTCGCTGAAGGGACTACGAAGGAAGAAAAATATGGTAAACAGGCCGAAAAGGACCGGTTATCTGAGCTTGTGACTCAGCATGAAAATCTCAAAGACATGTTTGTTAAGTGCGTGGTACGGAGGAAGGAGCGAGATGTGGTGTAA 2877 0.3959 MWYGPPYQSNDELSFDSDESEDNETSDENFRVDELNKISDNDDDSSSGSPYDDGKEENKKDLAREVNDRNSGISEMNNEEVKDKGPSVNNDEVEHSDYGSVATYTTFEKNGSFDSMKGSSSNKNETSKKQKAKSVENVSDERAKAKPNESVNLRDDVNVAKTKCKVEAKDNAKPNESHVKGLDVRGVTLVQTKQETMKESHKQKLMQNNGRDYRDRANIHNEKKESIDNNGLNRRVKSTHFMRNELLLAKCYLDRKNTMKNDSIVFEFNEDGVDRRDTRPPPVSVKTPPSIWSLKKVEKVQKTKEEEENEALWNELDITLRESDAVSMIGNLGTNEATKINSRSPSSRCEHDTFLDEEIGVYCKLCGVVITEIKYISPLVIDRFPFEGSGKKASFDGINTSLFDESQFNVSDNDPETNFSRNEGTVWGLIPDLKQTLYPHQQEGFEFIWKNLAGSVKLQKLKNADPCSEGGCIISHAPGTGKTRLVFLKAYLKAFPKCLPIIVAPASLLLTWEDEFKKWDIGVPFYNLSNPELSGKEHADAVETFDRSNTQHGIDETHGEIDFVVQRNKLLREENCDMRKVLLKAPGLLVLDEGHTPRNQRSHIWKVLSKIQTQKRIILSGTPFLNNFLELYNTLSLVKRSFPNTIPPELKSFCHKQGHKSSKKRSCEPVSGNTTRDPSDDKIKKLKLLMDPFVHVHKGAILENKLPGLRDCLVTLKADSLQNEILKSIKRSQNTLFNFERKIALTSVHPSLFLECALTKKEESVLDKDQLEKLRMNPHEGVKTKFLFEFVRLCDALHERVLVFSQFHAPLQLIKDQLNSSFKWSEGKEVLFMSGEDPPKVKQSLIHSFNDANCQAKVLLAATKAFSERINLVGASRVVLLDVVWNPSVERQAISRAYTIGQKRVVYTYHLLAEGTTKEEKYGKQAEKDRLSELVTQHENLKDMFVKCVVRRKERDVV* 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0991 958 SMART ultradead3 433 653 IPR014001 -
Mal3g0991 958 MobiDBLite consensus disorder prediction 124 152 - -
Mal3g0991 958 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 18 957 IPR044567 GO:0080188
Mal3g0991 958 Pfam Helicase conserved C-terminal domain 798 898 IPR001650 -
Mal3g0991 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 586 939 IPR027417 -
Mal3g0991 958 MobiDBLite consensus disorder prediction 75 91 - -
Mal3g0991 958 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 789 942 IPR001650 -
Mal3g0991 958 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 463 641 IPR014001 -
Mal3g0991 958 MobiDBLite consensus disorder prediction 1 152 - -
Mal3g0991 958 MobiDBLite consensus disorder prediction 93 123 - -
Mal3g0991 958 Coils Coil 924 944 - -
Mal3g0991 958 Pfam SNF2-related domain 449 730 IPR000330 GO:0005524|GO:0140658
Mal3g0991 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 645 IPR027417 -
Mal3g0991 958 Gene3D - 708 956 IPR027417 -
Mal3g0991 958 SMART helicmild6 812 901 IPR001650 -
Mal3g0991 958 CDD SF2_C_SNF 758 912 - -
Mal3g0991 958 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 18 957 - -
Mal3g0991 958 MobiDBLite consensus disorder prediction 14 28 - -
Mal3g0991 958 MobiDBLite consensus disorder prediction 48 68 - -
Mal3g0991 958 Gene3D - 409 688 IPR038718 -
Mal3g0991 958 MobiDBLite consensus disorder prediction 655 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0991 Mal-Chr3 40476599 40481736 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0991 589 933 RAD5 or RAD16-like Gene Family AT1G02670 26.055 1.44e-15 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal3g0991 SNF2_N 1.4e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0991 K10875 - gmx:100812737 768.074