Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0939 ATGGATGTGGAAAATCAAAATCCGGATTCAAATTTTCCATTCTGGAAACCCGTTCCTCGAAAATTTCGACCCGATTCACCTTTCTTCGCTATCGGTAACCTCGAACGAGAACTTCTTGTTAAACAGGTTGCGTTGGAATTAATAGAAGAGAAGGAACAGATTCAGGATTTTATACAAGAGGATGGAAGGGAAGTCTTCTGTCCTATTGTTGGGTGTGGAGTGCGTTTGGCTTCAATGGAGGACTTTGAAAATCACTATAATGCAAGACATACTGCATCCTGTTCTGTGTGTTCTAGAGTCTACCCAACTTCACGTTTGCTCAGCATACATGTATCCGAAGCTCATGATTCTTTCTTTCAGGCAAAAGTTGCACGTGGCTATGACATGTATGAATGCTTAGTGGAAGGTTGCGGATTGAAATTCAAAAATTACAAAAGTAGGCAGCAGCATCTAGTTGACAAGCATAAATTCCCAACGTCATTTGAGTTTTTCAAGAAGGCTCTGCCTTCAAAGAAACACAGGATGAAGTCTCAACGCAAAAAACCTTCTCAAAAGGAGGATACTTCAGGAATGATGGAAGTGGAAAATGCAGCTATAGATGACCTTGTTTCAGCAGTATCTAAATTAAATACTTCGGACACCACTCCTTCCTCTATCAGCTTTGGTCGCCGTAACACTAAAGGCATGTCATTCGTCCCTCGAGCTGTTCAGCGTGGGAACGGGTCAAACTCGGGTTCGTCCGCTACTAAGAAATAA 756 0.4206 MDVENQNPDSNFPFWKPVPRKFRPDSPFFAIGNLERELLVKQVALELIEEKEQIQDFIQEDGREVFCPIVGCGVRLASMEDFENHYNARHTASCSVCSRVYPTSRLLSIHVSEAHDSFFQAKVARGYDMYECLVEGCGLKFKNYKSRQQHLVDKHKFPTSFEFFKKALPSKKHRMKSQRKKPSQKEDTSGMMEVENAAIDDLVSAVSKLNTSDTTPSSISFGRRNTKGMSFVPRAVQRGNGSNSGSSATKK* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0939 251 MobiDBLite consensus disorder prediction 209 251 - -
Mal3g0939 251 MobiDBLite consensus disorder prediction 209 225 - -
Mal3g0939 251 PANTHER ZINC FINGER PROTEIN 511 9 238 - -
Mal3g0939 251 PANTHER UNCHARACTERIZED 9 238 IPR039258 -
Mal3g0939 251 MobiDBLite consensus disorder prediction 170 191 - -
Mal3g0939 251 ProSitePatterns Zinc finger C2H2 type domain signature. 132 155 IPR013087 -
Mal3g0939 251 SMART c2h2final6 130 155 IPR013087 -
Mal3g0939 251 SMART c2h2final6 92 115 IPR013087 -
Mal3g0939 251 SMART c2h2final6 65 90 IPR013087 -
Mal3g0939 251 MobiDBLite consensus disorder prediction 236 251 - -
Mal3g0939 251 Coils Coil 40 60 - -
Mal3g0939 251 ProSitePatterns Zinc finger C2H2 type domain signature. 94 115 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0939 Mal-Chr3 37786686 37789591 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0939 11 247 C2H2 Transcription Factor Family AT5G14140 63.415 4.57e-112 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal3g0939 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0939 - - gmx:100819557 411.379