Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0904 ATGGTTTTGCTTGATGAGGATGGTAACAAAATTCACGCCTCAATTAAGAAAACTTTACTATACAAATTCAAAAACGAGATTTTTGAAGAAAAATGTTACAGCTTTGAAAACCTTGGTGTAGCTATCAATGGTGGGAGCTACAGAACTACAAGACACGGTTACAAACTGAATTTTCAGTTTAGTACCAAGGTTCAGTATCTCCCAAATATGAAAATCATTAGGTCTCCTTACAACTTAATACCAATATCTGAAATTGTTGATGGAAATTTTGATTTTGACTATCTGCCTGACCTGATTGGTGTTCTTTCTGGAGTGGGTACTGAAAGGGAATTGGAAAGGAATGGTAGCACTACAAAGTTGAATGTTATTGAACTTGAAGCAGAAGGGCATAAGATACAATGTACCTTGTTTGGAAGCTATGTTGACGAGCTTAATAGTTTCATTGCAAGTGGAGAGAATCAAAATGCTATTGTCATTGTTCAGCTGGCCAAAGTCAAGACTTTTCAAGATAAAATTCATTTGCAAAATTGTCACAATTGCACAAAACTGGTTTTTAACCCTACTTGCCCTGATGGTATAAGCTTTAGGAACAGGCTTGCTGAAATTGTTGATACGCCTTCATCCCTTGCTTTAACACAATTGCAACCTGAACGAAGGGTTGAACCTAGGGATGACTTTCTCTTTATTACAGAAAGAAGAACAATGGAAGGGCTTAAGGATTCATCCACTGACTCTGTCTATGTTGTTATTGGTACTATAGAGAGGATTGTGAATCAAGAAAACTTTTGGTACACCGCCTGGATATGTTCTAAAGCTGTCATACCTGACTCCCAAATGTTTTTTTGTGAGAAATGTGACAAACATGTGAAGAAGGTTTTTCCTAGGTATTGCTTAAAGATTAGAGCTATTGACCACACTGACTGTGCTACTCTGGTCATCTTTGACAAAGAATGCTCATTTCTTTTTAACAAAAGTTGTGCTGACATGCTTTCTCAACATGAGCAGATATACCTTATTGCTGTATCTGAGGGTCAGCTTCCTCCTCTGATGCATGCACTTATTGGGCAAACATATCTTTTCAAAGTTGAGACTAAGGCTAATTTTAGTCCAAGATTTGAAAGATCTTTCCGTGTGAAAAAGATTTGTGTTGACCCTGTTGTGATTGATGAGTTTAAGCAAAAGTGGGACCGTGAAGAGGCTTCATTTGCCAAACATGCAAATGAACCTATCTCATTATCTGACTCTCTTGAGAAATTAAAGGGCAAAGGCAAGGCAGTGGCTGAAAATTCTGGTGCTGTTACACAGGATTTGTTGCCCAAGTTTGCAGGAGCTGTTTCTGAGCCTGATTTGAAAGAAATCACTCCCAAAGTTGCTGATTCAGGAACCAAAAGGGTCTCTCCTACCAAGGAGAATGAGGATATGAATATGCCTATTAAGCTGCTGAGGAGGAGTGTCAAGATTGAAAAGCTCTAG 1473 0.3836 MVLLDEDGNKIHASIKKTLLYKFKNEIFEEKCYSFENLGVAINGGSYRTTRHGYKLNFQFSTKVQYLPNMKIIRSPYNLIPISEIVDGNFDFDYLPDLIGVLSGVGTERELERNGSTTKLNVIELEAEGHKIQCTLFGSYVDELNSFIASGENQNAIVIVQLAKVKTFQDKIHLQNCHNCTKLVFNPTCPDGISFRNRLAEIVDTPSSLALTQLQPERRVEPRDDFLFITERRTMEGLKDSSTDSVYVVIGTIERIVNQENFWYTAWICSKAVIPDSQMFFCEKCDKHVKKVFPRYCLKIRAIDHTDCATLVIFDKECSFLFNKSCADMLSQHEQIYLIAVSEGQLPPLMHALIGQTYLFKVETKANFSPRFERSFRVKKICVDPVVIDEFKQKWDREEASFAKHANEPISLSDSLEKLKGKGKAVAENSGAVTQDLLPKFAGAVSEPDLKEITPKVADSGTKRVSPTKENEDMNMPIKLLRRSVKIEKL* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0904 490 Gene3D - 1 68 IPR012340 -
Mal3g0904 490 SUPERFAMILY Nucleic acid-binding proteins 236 386 IPR012340 -
Mal3g0904 490 Pfam Domain of unknown function DUF223 1 94 IPR003871 -
Mal3g0904 490 CDD RPA1_DBD_C 236 394 IPR013955 -
Mal3g0904 490 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 1 330 - -
Mal3g0904 490 PANTHER REPLICATION FACTOR A 1, RFA1 1 330 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal3g0904 490 MobiDBLite consensus disorder prediction 452 475 - -
Mal3g0904 490 Gene3D - 221 392 IPR012340 -
Mal3g0904 490 Gene3D - 71 205 IPR012340 -
Mal3g0904 490 CDD RPA1_DBD_B_like 97 191 - -
Mal3g0904 490 SUPERFAMILY Nucleic acid-binding proteins 1 69 IPR012340 -
Mal3g0904 490 SUPERFAMILY Nucleic acid-binding proteins 77 199 IPR012340 -
Mal3g0904 490 CDD RPA1_DBD_A_like 1 64 - -
Mal3g0904 490 Pfam Replication factor-A C terminal domain 249 369 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0904 Mal-Chr3 35603067 35605599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0904 3 329 Core DNA Replication Machinery Family AT4G19130 21.037 2.55e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0904 - - mtr:MTR_4g036240 533.102