Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0885 ATGGAGCATCACAGTGAAGGAAGTGGTTCTTCTTCTTCTCATAAGAGGAAGAAACGTTACAACCGTCACACTCCTAATCAGATTCAAAGGCTTGAAGCGGTTTTTAAAGAATGTTCACATCCGGATGAAAAACAAAGGTTTCATTTAAGCAAGGAATTAGCCTTGGATCCTAATCAAATCAAATTTTGGTTTCAGAATAGAAGGACTCATATGAAGACCCAACATGATAGAGCTGATAACGCTACACTCATAGCGGAGAATGATAATCTAAGATCAGAGAATATAGCTATGATGGAAGCCCGTAAAAATGTTACTTGCTCCACATGTGGTGGTCCTCCAATCAATTTTGATGGTTATTTTGAAGAACAAAAGTTGAGAATTGAAAATGCTCAACTCAAAGAAGAGCTTGCTAGAGTATCTACCATTGTAGCTAGTTACACTGGAAGATCAATGCCACACCTTCAACCCATTACACCAATTCACTTACCATTGAACTTAACAATGGGGAATTTTGGTAGACAAGGATTTGTTGGAGGACCTTCACTTCATCTTGATAATCTTAAACCAGGAAGTTCATCAACAATGCCAAATGTTCCTAATTACCAAACTTCTTGTCTCTCTAATATGGAAAAATCACTCATGTCTGACATTGCTACAAATGCAATGGAAGAACTTGTTTTGCTTTTGCAGACTAATGAGCCTTTGTGGATGAAATCAAACACTGATGGAAGAAATACTCTTAACCTTAAAATCTATGAATCAATGTTTCCTAAGATGAATAATCAGTTAAAGAATCCGAATATTCGGATTGAAGCTTCTAAAGTTTCTGGTGATGTTATCATGAATGGCTTGAATTTGGTTGAAATGTTTTTGGATCCTAACAAGTGGATGGAGCTATTTCCAACTATTGTGACAATGGCAAAGACTATTGAAGTTATATCTTCTGGGACGATGGGTGGTCTTAGTGGTTCTTTGCAATTGATGTATCAAGAGTTGCAAGTGCTTTCACCACTTGTTCCTATTAGAGAATTCTACTTCCTACGTTTCTGTAAGCAAATTGAGCAAGGATTATGGGCAATAATTGATGTTTCATATGATATTCCTCATAACAACAATTTCGCGCCGCAATTTCGATGTCATCGTTTTCCTTCAGGTTGCTTGATCCAAGACATGCCTAATGGCTGTTCCAAGGTTACTTGGATTGAACATGTTGAGGTTGAAGACAAAAATCCAGTTCATATGCTTTATAGAAATGTAATCTATAGTGGTGTTGCATTTGGAGCTGAAAAATGGCTCACTACACTTCAGAGAATGTGTGAAAGGCTTGCTTATGGTATGATTTCAGGCCATTCTACCTGCGACCTAGGAGGAGTGATTCCATCGCCTGAGGGAAAGAGGAGCATGATGAAGTTAGCACGAAGGATGGTGAGTAATTTCTGTGAAAGCATAAATGCATCAGCAAGTCATAGATGGAGCACAGTCTCAACTTTGAATGAGATTACTGTGAGGAAGAGTACAGATCTTGGTCATGGTGGGACGCTATGTGCAGCTACTACCATTTGGTTACCTCTCCCTCCACAAACTGTGTTCAATTTTTTGAAAGATGAAAAGAAAAGATCTCAGTGGAATGTTCTTTCCAATGGTAATGATGTTGAAGAGGTTGCTCATATAGCAAATGGTTCACACGCTGCTAACTGCATTTCCATTCTTAAGGGTTTCAACACAAGTCAAAACAACATGCTGATACTACAAGAAACCTGTGTGGACTCATCAGGTTCACTTATAGTGTCTTGTCCAATTGACTTAGCAGCTATAAACCTAGCAATGAGTGGTGTAGATCCTTCATACATTCAATTACTACCATCAGGTTTCACAATTACTTCTGATGGAAAGCAAAATGATAATAATGGTGATGTTGCATCAACAAGCTCAAACACAAACATTGGAGGATCATTGTTAACAGTTGCATTTCAAGTTATGATGAGTAGTTTACCATCTGCAAAACTTAACATGGAGTCTGTTGCAACTGTTAATGGACTTATTGGGAAGACTATCCAACACATAAAAGATGCTTTGAATTGTCCTATGTAG 2091 0.3797 MEHHSEGSGSSSSHKRKKRYNRHTPNQIQRLEAVFKECSHPDEKQRFHLSKELALDPNQIKFWFQNRRTHMKTQHDRADNATLIAENDNLRSENIAMMEARKNVTCSTCGGPPINFDGYFEEQKLRIENAQLKEELARVSTIVASYTGRSMPHLQPITPIHLPLNLTMGNFGRQGFVGGPSLHLDNLKPGSSSTMPNVPNYQTSCLSNMEKSLMSDIATNAMEELVLLLQTNEPLWMKSNTDGRNTLNLKIYESMFPKMNNQLKNPNIRIEASKVSGDVIMNGLNLVEMFLDPNKWMELFPTIVTMAKTIEVISSGTMGGLSGSLQLMYQELQVLSPLVPIREFYFLRFCKQIEQGLWAIIDVSYDIPHNNNFAPQFRCHRFPSGCLIQDMPNGCSKVTWIEHVEVEDKNPVHMLYRNVIYSGVAFGAEKWLTTLQRMCERLAYGMISGHSTCDLGGVIPSPEGKRSMMKLARRMVSNFCESINASASHRWSTVSTLNEITVRKSTDLGHGGTLCAATTIWLPLPPQTVFNFLKDEKKRSQWNVLSNGNDVEEVAHIANGSHAANCISILKGFNTSQNNMLILQETCVDSSGSLIVSCPIDLAAINLAMSGVDPSYIQLLPSGFTITSDGKQNDNNGDVASTSSNTNIGGSLLTVAFQVMMSSLPSAKLNMESVATVNGLIGKTIQHIKDALNCPM* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0885 696 CDD START_ArGLABRA2_like 211 440 - -
Mal3g0885 696 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 5 694 - -
Mal3g0885 696 ProSitePatterns 'Homeobox' domain signature. 49 72 IPR017970 GO:0000981|GO:0006355
Mal3g0885 696 SMART HOX_1 15 78 IPR001356 GO:0003677
Mal3g0885 696 CDD homeodomain 16 75 IPR001356 GO:0003677
Mal3g0885 696 ProSiteProfiles START domain profile. 207 444 IPR002913 GO:0008289
Mal3g0885 696 SUPERFAMILY Bet v1-like 462 689 - -
Mal3g0885 696 Coils Coil 122 142 - -
Mal3g0885 696 Gene3D - 3 86 - -
Mal3g0885 696 Pfam START domain 217 441 IPR002913 GO:0008289
Mal3g0885 696 SMART START_1 216 441 IPR002913 GO:0008289
Mal3g0885 696 SUPERFAMILY Homeodomain-like 9 76 IPR009057 -
Mal3g0885 696 ProSiteProfiles 'Homeobox' domain profile. 14 74 IPR001356 GO:0003677
Mal3g0885 696 MobiDBLite consensus disorder prediction 1 26 - -
Mal3g0885 696 Pfam Homeodomain 17 72 IPR001356 GO:0003677
Mal3g0885 696 SUPERFAMILY Bet v1-like 209 443 - -
Mal3g0885 696 Gene3D - 215 442 IPR023393 -
Mal3g0885 696 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 694 IPR042160 -
Mal3g0885 696 Gene3D - 472 674 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0885 Mal-Chr3 35037182 35044028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0885 15 695 Homeobox Transcription Factor Family AT1G73360 57.659 0.0 790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal3g0885 START 4.5e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0885 K09338 - gmx:100785023 984.556