Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0855 ATGGCACCTAGAAAAAGGCATTTGCAACAATTGAATCATCCATTTGACGATGCTTATCCATTTGAAGCAGTAAGGAATGACTCATGGCAACCTGTGGAGCTTATAAAAATCGAGTCAGGGAAAACAATCTTACATTTCATGGATAGTCAACAAATGCAAACCCCTTTGTCATCTGATATTCGCATAAGATCAAGAAAAGCTACTTCATTTGATTGCTCTAACTTTTTAAGACGTGGAATTGACATATCTATGATCCAACTTTCAAATCAGTTTGGTCATATTCCAACATCAATTGATGCAAGAATAAACTCCATCCAGAGGAAACCTCACGAATCTGATCAATGCTCATGTCAATTTTATTTAAATTTCTATGAGGATCAAGGTTCACTTGGTGCAAATATAAAAACACTAAACAAAGATGTTTATGCAACTGGAATAGATCGAATTTTCATCCTCCAAAGGCTTCAACATAATACTTGCGGTGAAGGCTTAATAAAAAAGAGTGATGTTTCTCAAGTAGTTAAGCCTTATAGGTGGGGTTCATCAGAAGATTGCTCGACATTATCACAATCTAGATTAATCTTGGGGAAATTTTTATCTGATCTTTCGTGGTTCGTCACAACATCTTTTTTAAAGAAGGTTTCATTCAGTATCAGATCTGTTCAACACAAGATTGTGTATCATGTTATGGAAAATGATACTGATATTATTAATCCTTCTCTTATAAATGTTCTGAACTTCAAATCAGAAAAAGGATCAATAGTACCTATTGTTTCTCTATTTGATATGTTTTCTGATTATGATGGAGAAGAAGATGAAGCACCACTGCCATCAAATCAAATTGAACTCCTGCGACGTTCAAAACGTAGGAATGTCCTACCCAAACGTTACAGAGGTTGTGTTAATGAGAAGTTGGAAGTTGGTAATTTTCGAACGAGGCCATACAAGAGAGGAACTTATGTGATAGAGGATGAAAACTCTTCTTCAGATTTAGAAGAGTATGATGGTAAGAATGGTGAAACTCTTCTTTCAAAGAAGAATGGTGCTGCTGCTGGTGTGTTGAATTTGGAGCCATGCAATATTGCTACAATATCAAGTGATGAAGAAATTGATGATAATGTTACTTTGGGACATTATTATAATTTCTGCAGAGAGAAAGGAGCTCAAACAAAAAGATATCGTTCAATTTGTTTGACAAACAATAGTCATGTTCATGAAGAACAAGAAAATAAAGGTGGCAGAACGTTAAACGCTGATGCACGCAAAGAAATAATTGACTCTTACATGAAGAATTTGGATAGTTTACCAGCTGAAGAAGAGCCAACTATCAATGAAGAAACAGACAAGTCGGAGCAGAAAGAGGAAGAAAAAATATCGAAAAGCGATGATGAAATCATTGACTTGTGGGAAGAAATGGATACCGCTATGAAATCAAGTTATTTTCTTGATGGAACTGAGGGTTCAAATCAAGAGGTTTTAGCGGAAACAAAGAAAGAAACTTGTGAACATGACTATAGATTGGATGAACAAATTGGAATATACTGCCGTAGATGTGGCTTCGTGAAAACTGAGATACGATACATTTCTGAAGTTGTCGTGGAAAGAAGAGAATGGCAAAAAGAGGAGAAACAACGAAGTGGAGAAGATAATAATGAACAAAAATCAGAGCCAAAATTTGTTGATGATAATAATGATATGTTTTCAACTCATGATACTAATCGTGATGAACTCAAAGAAAAAGACAATGTTTGGGAACTGATTCCAGAACTCAAAGAAAAGATGCATCCACACCAGAAAAAAGCTTTTGAATTTCTTTGGCAAAACATTGCTGGCTCTGTGGAACCATCACTCATGCAAGAAAAATCCAAAACATGTGGTGGCTGTGTTATATCACATGCTCCTGGAGCTGGAAAAACCTTTCTCATCATTTCTTTTCTTGAAAGTTACTTGAAGTTATTTCCAGGGAAAAGACCATTAATCCTTGCACCAAAATCAACACTCTATACATGGCGCAAAGAGTTCAAAAAATGGAAGGTTTCTATGCCAGTGTATCTTATCCACGGCCGTCGAACCCGGAGAGGTTCAACGGCTCCAAGACCTACGGTTCCAAGACCTTCTGGTGATGTAAAATATGTTTTGGATTGTCTTGGCAAGATACAAAAGTGGCATTCACACCCGAGTGTTCTTATCATGGGCTATACTTCATTTTATGCATTAATGAGCTCAAAAGATACAAAATTTGCTCACAGAAAGTACATGGTTAAAACATTGAGTGAAAGCCCTGGAATCTTGATACTTGATGAAGGTCACAATCCTAGAAGCTCTAAATCAAGGTTGAGGAAATGTTTAGTGGAACTTCCGACAGAATTGAGAATTTTACTCTCTGGGACATTGTTTCAGAACAATTTCGGTGAATATTTCAACACACTTTGTCTAGCGAGACCGATATTTGTTCACGAAGTACTAGAAGAGTTAGATTCTAAATACTTGAGGAGTGGCAACATAGAGAAGAAAGCGCAGAATTTACTCGAGGCACGGGCGAGGAGATGCTTCTTAGACAATATTGCTAAAAAAATCAACTCAGATAATGATGAGGACAAAATGCAGGGACTACATGTGCTGCGAAAGATCACAAGCAGTTTCATCGACGTTTACGAAGGTGGAAATTCATCTGATACTCTTCCTGGTTTGCAAGTCTATACACTTCTCATGAACACATCCGATCAACAGCATGAGATTTTACTGAAACTGCAGAACAAAATGGCTGAGTGTACCGGTTACCCTCTTGAGCTAGAGCTTTTGATAACACTCGGATCGATACATCCTTGGTTGATCAAAACAGCAACAGCATGTGCAGATAAGTTTTTTGCCAAAGAAGAATTGAAGATAATAGAAGGTAGCAAATTTGATTTGAGAAAAGGTTCCAAAATTAGATTTGTACTGAGCCTAATCTCACGTGTAGTGAAAAAAGAAAAGGTTCTTATCTTTTGTCACTACCTTGCACCTGTGAGATTTTTAATCGAGTTATTTGAGAAGTACTTTCAATGGCAAAATGGAAAAGAGATTCTGTTACTAACCGGTGCACTAGATTTGTTTGAAAGAGGGAAAGTGATGGATAAGTTTGAAGATCCTCGCAGCGGTTCAAATATACTTCTGGCTTCGATAAATGCTTGTGCTGAAGGTATTAGCTTAACCGCAGCTTCTAGAGTTATTTTTTTGGATTCTGAATGGAATCCTTCAAAAACAAAGCAAGCTATTGCGCGCGCTTTTCGTCCTGGTCAGCAGAAAATGGTTTATGTGTATCAGTTATTGACAAGCGGGTCGATGGAGGAAGATAAGTATAGAAGAACCACTTGGAAAGAGTGGGTTTCTTGCATGATTTTTAGTGAAGAGTTTGTGGAAGATCCTTCTAAATGGCAAGCAGAGAAGATCGAAGATGAAATACTTAGGGAGATGGTTGAAGAGGATAAGTCTAAAGCTATTCATATGATTATGAAGAATGAAAAGGCTTCTATAAGGAATATGCCGCGTCATACAGAAGGACAGCATTGCTTTCTAGAGGGACTTGGACAGCAAGGCTTTTCAGAAGGATCAGAATTGGTTATGCAGGAGCCACAATCTGTTGGGCGTGAACCGCAAATCCAGGAAGTGAGAAAGAGGGACGAGGCATCGAATTCCAAGTACAAAGCTGAAAGGTTTTGA 3702 0.3755 MAPRKRHLQQLNHPFDDAYPFEAVRNDSWQPVELIKIESGKTILHFMDSQQMQTPLSSDIRIRSRKATSFDCSNFLRRGIDISMIQLSNQFGHIPTSIDARINSIQRKPHESDQCSCQFYLNFYEDQGSLGANIKTLNKDVYATGIDRIFILQRLQHNTCGEGLIKKSDVSQVVKPYRWGSSEDCSTLSQSRLILGKFLSDLSWFVTTSFLKKVSFSIRSVQHKIVYHVMENDTDIINPSLINVLNFKSEKGSIVPIVSLFDMFSDYDGEEDEAPLPSNQIELLRRSKRRNVLPKRYRGCVNEKLEVGNFRTRPYKRGTYVIEDENSSSDLEEYDGKNGETLLSKKNGAAAGVLNLEPCNIATISSDEEIDDNVTLGHYYNFCREKGAQTKRYRSICLTNNSHVHEEQENKGGRTLNADARKEIIDSYMKNLDSLPAEEEPTINEETDKSEQKEEEKISKSDDEIIDLWEEMDTAMKSSYFLDGTEGSNQEVLAETKKETCEHDYRLDEQIGIYCRRCGFVKTEIRYISEVVVERREWQKEEKQRSGEDNNEQKSEPKFVDDNNDMFSTHDTNRDELKEKDNVWELIPELKEKMHPHQKKAFEFLWQNIAGSVEPSLMQEKSKTCGGCVISHAPGAGKTFLIISFLESYLKLFPGKRPLILAPKSTLYTWRKEFKKWKVSMPVYLIHGRRTRRGSTAPRPTVPRPSGDVKYVLDCLGKIQKWHSHPSVLIMGYTSFYALMSSKDTKFAHRKYMVKTLSESPGILILDEGHNPRSSKSRLRKCLVELPTELRILLSGTLFQNNFGEYFNTLCLARPIFVHEVLEELDSKYLRSGNIEKKAQNLLEARARRCFLDNIAKKINSDNDEDKMQGLHVLRKITSSFIDVYEGGNSSDTLPGLQVYTLLMNTSDQQHEILLKLQNKMAECTGYPLELELLITLGSIHPWLIKTATACADKFFAKEELKIIEGSKFDLRKGSKIRFVLSLISRVVKKEKVLIFCHYLAPVRFLIELFEKYFQWQNGKEILLLTGALDLFERGKVMDKFEDPRSGSNILLASINACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTSGSMEEDKYRRTTWKEWVSCMIFSEEFVEDPSKWQAEKIEDEILREMVEEDKSKAIHMIMKNEKASIRNMPRHTEGQHCFLEGLGQQGFSEGSELVMQEPQSVGREPQIQEVRKRDEASNSKYKAERF* 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0855 1233 CDD SF2_C_SNF 975 1104 - -
Mal3g0855 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 892 1158 IPR027417 -
Mal3g0855 1233 MobiDBLite consensus disorder prediction 1213 1233 - -
Mal3g0855 1233 MobiDBLite consensus disorder prediction 1196 1233 - -
Mal3g0855 1233 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 21 1170 - -
Mal3g0855 1233 Pfam SNF2-related domain 592 859 IPR000330 GO:0005524|GO:0140658
Mal3g0855 1233 Gene3D - 898 1182 IPR027417 -
Mal3g0855 1233 MobiDBLite consensus disorder prediction 433 461 - -
Mal3g0855 1233 SMART ultradead3 590 824 IPR014001 -
Mal3g0855 1233 SMART helicmild6 1008 1093 IPR001650 -
Mal3g0855 1233 MobiDBLite consensus disorder prediction 442 461 - -
Mal3g0855 1233 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 21 1170 IPR044567 GO:0080188
Mal3g0855 1233 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 979 1164 IPR001650 -
Mal3g0855 1233 Pfam Helicase conserved C-terminal domain 976 1092 IPR001650 -
Mal3g0855 1233 Gene3D - 560 859 IPR038718 -
Mal3g0855 1233 MobiDBLite consensus disorder prediction 538 573 - -
Mal3g0855 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 579 818 IPR027417 -
Mal3g0855 1233 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 619 816 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0855 Mal-Chr3 33066073 33071598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0855 992 1111 RAD5 or RAD16-like Gene Family AT5G05130 36.364 2.48e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal3g0855 SNF2_N 1.8e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0855 K10875 - gmx:100781856 1175.61