Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0793 ATGGCTTCGTCGAACAAACATTGGCCTAGCAGGTTCAAGAAGTCGACCAATACGTCCAACCAACAGAATTCGCAGCATGGCCTCAATTCCTCTCTCTTAACTGGTGGAGATGGTGATGAGAGAAGTCCAGAACCAAAGCCAAGATGGAATCCCAAACCAGAGCAAATTCGCATTCTCGAAACCATCTTTAACTCAGGGATGGTGAACCCACCAAGGGAGGAGATTACAAAGATACGTGAACAATTACAAGAGTTTGGTCAAGTTGGTGATGCAAATGTATTTTACTGGTTTCAAAACCGCAAGTCTAGAAGCAAACAAAAGAAAAGATTCCTCCACAACAAGAAACCAAAAACACAACAAAACTATGCTCCATATGAAAGCATAACACCACAACCCAATTCATCCTCATCATCTTCCTCTGATCATCAAAAACTCTCTCCCAATATTAATGATGGGATGGTGGGGTTACCTAATTCACCTGCAGTCTCTATGAACCAAAATCAAGGTGATACTAATTTTGACACCCCCACTGAAACTTATTTACAACTACCTACACCCCCATTTTTCTCTTTCCCTGTAGAGAATCACATTAATGAAGGAGTGGTGCCTAATGCCATGACAACACCACAAGGGTTTAATTACTTATCTGATTTCACCAATATGATTCAACCCTTACCTCAGCAAAATGTTGCTCTACCCTTGGTTAATCATGAGATCATCATGAACAATGGAAATGAAAGTGGAATTTCCTCAATGGATGATCAAGAGAATATTCAAGAAGAAGGAATGAATATGATTCACATGCACCAACAAGACCCACAACTTAATTTTGGTGTCACTACAACTTCAAGTAATAATGATGATTCAAATGATCTTGCTCCTCTTCCTCCCATTACCATTGATGCACCTGCTGCATTCCCCATTATTGATCATCTTCAAGATTTTGGTGAGGAAGATGGCACGGAAAAATGTACGGTGTTTATTAACGACGCTGTATTCAAGGTTGATATGGGACCCTTTAACGTTCGTGAATACTTTGGAGATGGAGCAGTTCTCTTTGACTCCTCCGGTGCTCCTGTTCTCACCGATGAATGGGGTGTCACCCTCGACTCACTACACCATGGCGCTGCATATTACCTGATTAGAAAATTTTCAATTTGGATCTATTAG 1170 0.4085 MASSNKHWPSRFKKSTNTSNQQNSQHGLNSSLLTGGDGDERSPEPKPRWNPKPEQIRILETIFNSGMVNPPREEITKIREQLQEFGQVGDANVFYWFQNRKSRSKQKKRFLHNKKPKTQQNYAPYESITPQPNSSSSSSSDHQKLSPNINDGMVGLPNSPAVSMNQNQGDTNFDTPTETYLQLPTPPFFSFPVENHINEGVVPNAMTTPQGFNYLSDFTNMIQPLPQQNVALPLVNHEIIMNNGNESGISSMDDQENIQEEGMNMIHMHQQDPQLNFGVTTTSSNNDDSNDLAPLPPITIDAPAAFPIIDHLQDFGEEDGTEKCTVFINDAVFKVDMGPFNVREYFGDGAVLFDSSGAPVLTDEWGVTLDSLHHGAAYYLIRKFSIWIY* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0793 389 CDD homeodomain 45 108 IPR001356 GO:0003677
Mal3g0793 389 Pfam Homeodomain 46 106 IPR001356 GO:0003677
Mal3g0793 389 Gene3D - 46 112 - -
Mal3g0793 389 ProSiteProfiles 'Homeobox' domain profile. 42 107 IPR001356 GO:0003677
Mal3g0793 389 MobiDBLite consensus disorder prediction 1 36 - -
Mal3g0793 389 MobiDBLite consensus disorder prediction 39 53 - -
Mal3g0793 389 MobiDBLite consensus disorder prediction 116 147 - -
Mal3g0793 389 MobiDBLite consensus disorder prediction 105 161 - -
Mal3g0793 389 SMART HOX_1 44 111 IPR001356 GO:0003677
Mal3g0793 389 SUPERFAMILY Homeodomain-like 40 109 IPR009057 -
Mal3g0793 389 MobiDBLite consensus disorder prediction 1 55 - -
Mal3g0793 389 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 383 IPR044557 GO:0003700|GO:0050793
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0793 Mal-Chr3 30610900 30615969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0793 1 381 Wox Gene Family AT5G45980 35.264 2.06e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Mal3g0793 Homeodomain 7.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0793 - - mtr:MTR_7g025010 553.518