Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0746 ATGGAGCCTCTGATGATTTCCAATCCTAAATTGCTTGATTGCTGCAATTGTTTTCAACCTTTAAGTATTCCTGTCTTTCAGATGCAAATCTACGTAATCACCACGACTAGAAAGATGATCCCCCTAAGGGTTAAGAGGTCAGACACAATAATCAATGTGAAGGAGAAGATTTTTGACAAGGATAAAAGTTTCCCATTGCACGTACAACGTCTGATCTTTGCCGGTACACAACTAGATGACAGCCTGACTCTTGCCAATTACAACATCGAAGAGAAGTCAACCCTCCTCCTCGTCCTCCGCCTCATTGGGGACTAG 315 0.4286 MEPLMISNPKLLDCCNCFQPLSIPVFQMQIYVITTTRKMIPLRVKRSDTIINVKEKIFDKDKSFPLHVQRLIFAGTQLDDSLTLANYNIEEKSTLLLVLRLIGD* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0746 104 PRINTS Ubiquitin signature 38 58 IPR019956 -
Mal3g0746 104 PRINTS Ubiquitin signature 81 102 IPR019956 -
Mal3g0746 104 PANTHER GH17761P 27 103 - -
Mal3g0746 104 Gene3D - 25 104 - -
Mal3g0746 104 Pfam Ubiquitin family 30 101 IPR000626 GO:0005515
Mal3g0746 104 SUPERFAMILY Ubiquitin-like 27 103 IPR029071 -
Mal3g0746 104 PANTHER UBIQUITIN 27 103 - -
Mal3g0746 104 SMART ubq_7 28 100 IPR000626 GO:0005515
Mal3g0746 104 ProSiteProfiles Ubiquitin domain profile. 28 104 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0746 Mal-Chr3 28346312 28349127 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0746 28 103 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 61.842 3.83e-22 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0746 - K08770 peq:110022669 85.1149