LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal3g0680	ATGGCAAATTTTTCCCCTCAACCACTCTCAATGAAGACCGATGCATCATTTGCAACTCCTCTAGGTTCTTCTACCCAGGCTAACACCACTGCCCATAGCATGGCGTCCATGGAACAACTTATTCTTGAACTCAACAATCCCAATCTCAGGGAAAATGCTCTTCATGTTCTCTCCAAGAGGACTGAGTTATTTCATGAACTTGCACCTTTATTATGGCATTCTTGTGGTACTATTACAATACTTTTACAGGAAATAATTTCAATATACCATACTCTTTCGATGCTCAATCTTACTCAAGCACAATCAATTAGAGGGTGCAATGTTCTTGCACTACTCAAGTGTGTGGCATCTCACCCTAATACCAAAATGCTATTCCTTAACGCTAATATTCCTTTATATTTATATCCATTCCTTCAAACAACAAGTGAATTAACACAATTTGAGCATTTGAGGCTTGCTAGTCTTGGAGTCATCGGTGCCTTGGTGAAGGTTAACACCAAAGAAGACATAAATTTCCTTCTTTCAAACGAGATAATTCCATTATGCATACGCAGTATGGAAATCGGCAAAGAATTATCAAAAACTGTTGCAACATTTATAATTCAGAAAATTTTGTTAGATGATGATGGCTTGGCTTATGTTTGTGCTACAGCAGAGCGATTTTTTGCAGTAGTTCAAGTTCTGAACATGATGTTGCAAAGTCTCGAAAGTCAACCTTCACCTCGTTTGTTGAAGCTTATAATTCCATGCTATACGCTTTTGTCTCAACATCACAGAGCTCGCGATGCATTAACAAGGCGTTTTCCAAACATGCTCAAAAATGCCAATTTCATCAATTGTCTTCGTGAAGATCAAACAACTTGGTGGTGGCTAAAGAAGTTGCATGAAAATATTGTGGTGAACTAG	906	0.3819	MANFSPQPLSMKTDASFATPLGSSTQANTTAHSMASMEQLILELNNPNLRENALHVLSKRTELFHELAPLLWHSCGTITILLQEIISIYHTLSMLNLTQAQSIRGCNVLALLKCVASHPNTKMLFLNANIPLYLYPFLQTTSELTQFEHLRLASLGVIGALVKVNTKEDINFLLSNEIIPLCIRSMEIGKELSKTVATFIIQKILLDDDGLAYVCATAERFFAVVQVLNMMLQSLESQPSPRLLKLIIPCYTLLSQHHRARDALTRRFPNMLKNANFINCLREDQTTWWWLKKLHENIVVN*	302

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal3g0680	301	Gene3D	-	29	299	IPR011989	-
	Mal3g0680	301	Pfam	Cell differentiation family, Rcd1-like	40	298	-	-
	Mal3g0680	301	PANTHER	UNCHARACTERIZED	6	298	-	-
	Mal3g0680	301	SUPERFAMILY	ARM repeat	42	282	IPR016024	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal3g0680	Mal-Chr3	25884917	25890899	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Rcd1-like	Mal3g0680		Rcd1	2.6e-104	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal3g0680	K12606		-	tcc:18589742	347.051