Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0667 ATGGCATCCAAATCTTCGACCATCTCTGCCACTTCACATGATGGAGGTAATTCATCTCGCACAAAAGAAGGTGGAAACAGGAAGGAGAATGAGGATCATTCCTCAAAATCAAATTCCAAGTCGATAGATTTCATGAAGTTATCAAAAGACAATTCGGTTCGCGGGTTGAAGGTGCAAGAGCACAATTTTTTGAGTCCTATTCATGTTGGTTCATCATCTCGTATTCCTAATAACAACAATGAAGGTAAAGATGAGAACAACAATGAAGAGAAGAATTCAGATTCAAGAAATTTTAAATGCTCTTATTGCAAGGCACGATTTTCTACTGCACAAGCCTTAGGAGGACACCAGAATGCCCATAGAGCGGAACGTGCATTGGAAAAGCAACGTAAAGAAAGGTATGATGGCGGTGCTTTAACTTTAGGGAAACATCACTTTAACCCTTATTTTAGTTATCCTAGTACTCCTCTTACACCTTATAATCACAGGGCTCTTGGTGTTAAAATAGAGTCAACTATTCAAAAGCCACCTTATACTAACCCTAGAATTACCCCACATAGTTCTAGGTACGGTCATGATGCTTTGTGTTTGCAAGAGATATTAAACCCTTCGCTTGTTAGCTTGAAAAATAATATTGAAGGTAGTAATGCTGGAGTTGGAATTCTAGGTATTGGGGGAGCAAGTACTTCAAGGATTGAAGATGGTACAAATAAAATTAGGGCTATTCTAAGCCTTGGAAATTCTTTTACAAATGTTGCTTCAAGTTCAAACTCAAACATAAACAAGAAAAGTATTGTGGCTCCTACTTCTACAATGGATGGTATTCATAATTCAAAGGCAATCATTGAAGAAGAACCCTCCGATTCTAAATCTTCTGAGCTTGATTTAACACTTAAACTTTAA 903 0.3743 MASKSSTISATSHDGGNSSRTKEGGNRKENEDHSSKSNSKSIDFMKLSKDNSVRGLKVQEHNFLSPIHVGSSSRIPNNNNEGKDENNNEEKNSDSRNFKCSYCKARFSTAQALGGHQNAHRAERALEKQRKERYDGGALTLGKHHFNPYFSYPSTPLTPYNHRALGVKIESTIQKPPYTNPRITPHSSRYGHDALCLQEILNPSLVSLKNNIEGSNAGVGILGIGGASTSRIEDGTNKIRAILSLGNSFTNVASSSNSNINKKSIVAPTSTMDGIHNSKAIIEEEPSDSKSSELDLTLKL* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0667 300 SUPERFAMILY beta-beta-alpha zinc fingers 95 126 IPR036236 -
Mal3g0667 300 MobiDBLite consensus disorder prediction 1 19 - -
Mal3g0667 300 MobiDBLite consensus disorder prediction 64 96 - -
Mal3g0667 300 Gene3D Classic Zinc Finger 79 140 - -
Mal3g0667 300 MobiDBLite consensus disorder prediction 1 46 - -
Mal3g0667 300 PANTHER ZINC FINGER PROTEIN KNUCKLES 70 300 - -
Mal3g0667 300 PANTHER ZINC FINGER PROTEIN JAGGED 70 300 IPR045320 GO:0003700
Mal3g0667 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Mal3g0667 300 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Mal3g0667 300 Pfam C2H2-type zinc finger 98 123 - -
Mal3g0667 300 MobiDBLite consensus disorder prediction 65 82 - -
Mal3g0667 300 MobiDBLite consensus disorder prediction 20 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0667 Mal-Chr3 25490486 25491388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0667 90 184 C2H2 Transcription Factor Family AT1G80730 37.500 2.41e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal3g0667 zf-C2H2_6 2.7e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0667 - - mtr:MTR_3g011970 342.043