Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0622 ATGACTTTTTATGGTGTTGGGCTGTGGTTCCTTCCTTCATTCATCAACTACTCGTGTTGTCTTTATGCGAGGCAATTGCATGTTGGGGATTATTTGATAGTTCATGCTTCAAGAGATTTGAAAGCTGGTGAAGAGATAACTTTTGCCTATCTTGATCCAATTTCTCCCTTGAACAAGAGAAAAGAAGTGTCTGTGACATGTGTGATTCATTGCAAGTTTAAGAGTTGCAAGTTTGAGGGTGATATCTTGTTCTCCAAGCAAGAGGTGAAGGAGATTGAGAAGATGTAG 288 0.3958 MTFYGVGLWFLPSFINYSCCLYARQLHVGDYLIVHASRDLKAGEEITFAYLDPISPLNKRKEVSVTCVIHCKFKSCKFEGDILFSKQEVKEIEKM* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0622 95 Gene3D SET domain 1 81 IPR046341 -
Mal3g0622 95 Pfam SET domain 13 50 IPR001214 GO:0005515
Mal3g0622 95 SUPERFAMILY SET domain 4 55 IPR046341 -
Mal3g0622 95 Coils Coil 95 95 - -
Mal3g0622 95 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 5 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0622 Mal-Chr3 23317198 23317485 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mal3g0622 SET 2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0622 - - mtr:MTR_4g082140 155.221