LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal3g0584	ATGGTTTCTGCTCTCTCTCAAGTCATTGGAACATCTACCAATAATAATAACCCACACATGGCACAATCAACCTCAACTACTATGGTCAATGAAGAATCTCAACCACCTCAACCTCTTCTTGTTCAAGAGACCAAAAACAAACCACACTATAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCAGCTGAAATTCGTGACCCAAAAAAAGCAGCTAGGGTTTGGTTAGGAACATTTGATACAGCTGAAGATGCAGCTCTTGCATATGACAAAGCAGCACTCAAATTCAAAGGCACAAAAGCTAAACTTAATTTCCCTGAAAGAGTTGTTCAATGCAACACTTCTAGTGCAATTCAACAAAGTGGTTCTGTTTCTAATTCTGTTGATCAACAAGTTTTTCCAAACTTGTTTCAATATGCTCAGATTCTTTCTAGTGATGTTGAATTCCCTTATTATGCATCTCATCTTTTCAATCAACAACAACATCAAGGAGATAGTCACCCACCAGGCCAGTAG	516	0.3934	MVSALSQVIGTSTNNNNPHMAQSTSTTMVNEESQPPQPLLVQETKNKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAALAYDKAALKFKGTKAKLNFPERVVQCNTSSAIQQSGSVSNSVDQQVFPNLFQYAQILSSDVEFPYYASHLFNQQQHQGDSHPPGQ*	172

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal3g0584	171	SUPERFAMILY	DNA-binding domain	49	107	IPR016177	GO:0003677
	Mal3g0584	171	ProSiteProfiles	AP2/ERF domain profile.	49	106	IPR001471	GO:0003700\|GO:0006355
	Mal3g0584	171	Pfam	AP2 domain	48	98	IPR001471	GO:0003700\|GO:0006355
	Mal3g0584	171	MobiDBLite	consensus disorder prediction	1	36	-	-
	Mal3g0584	171	CDD	AP2	48	107	IPR001471	GO:0003700\|GO:0006355
	Mal3g0584	171	PANTHER	DNA-BINDING DOMAIN	14	162	IPR044808	GO:0003700\|GO:0009873
	Mal3g0584	171	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110	14	162	-	-
	Mal3g0584	171	SMART	rav1_2	49	112	IPR001471	GO:0003700\|GO:0006355
	Mal3g0584	171	PRINTS	Ethylene responsive element binding protein signature	72	88	IPR001471	GO:0003700\|GO:0006355
	Mal3g0584	171	PRINTS	Ethylene responsive element binding protein signature	50	61	IPR001471	GO:0003700\|GO:0006355
	Mal3g0584	171	Gene3D	AP2/ERF domain	49	108	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal3g0584	Mal-Chr3	22135558	22137859	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal3g0584	1	157	AP2-EREBP Transcription Factor Family	AT5G13330	50.847	8.08e-47	150

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mal3g0584		AP2	5.6e-16	CL0081