Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0556 ATGACAACCAGTGCTACCATACCTAGTGTTGGCATGGAATTTAATAGTGTAGATGAAGCTTGGCGATTTTGGGTTGAGTATGGTAAACAAACTGGCTTTGGAGTTAGAAAGGATTATATCAACAAAAGAAAGAAAGACAAATCCATTAGATCATGCAGATTTGTTTGTTGCAAGGAGGGTCATCGAGTGCCGGACAAGAGATCTTATTTAGTTAAGAATCCTAGAGCTGAAACAAGAACTGATTGCAAAGCAAGAATTGCACTTACTGTAAAGAATGGAAAGTTTGTAATCCATGAGTTTGTGGAGGACCATAACCATGATTTACAGCTTCCACAAACAACACACATGCTAGCATCACACCGTAAAATATCTGAAGTTCAAGCATATGAAATTGAAATGGCAGAGGACTCCGGGTTGAGGCAAAAGTCTTCATTTGGACTTATGAGTGCACAAGCAGGTGGCAGAACTAATCTTGGATATACACGGTTGGATGCTAAGAACTATCTTAAAGCAAGAAGACAACGTAATATGGTTTATGGGGAAGTTGGTAGTCTTATGAAGTATTTTCAACATCAGTTATTAAAGAATCCTTCTTTTTTTCATGCACATCAGATGGATTGCGATGAACAAATTACAAATGTATTTTGGGCTGATGCAAAAATGATTTTAGATTATGGATATTTTGGTGAGGTGGTTTCTTTGGATACAACATATTGCACTAATCACGCTAATAGACCGTTAGCATTGTTTTCAGGCTTTAACCATTATAGAGGAACTGTCATTTTTGGGGCTGCACTCTTATATGATGAAACTGCTGAATCTTTCAAATGGTTATTTGAAGTATTTCTTGAAGCACATGGAAATAAAAAACCTCAAACTTTGTTCACAGATCAAGACCAAGCAATGGCTAAAGCTCTAGCTGAAGTGATGCCAGAGACTCGACACGGGTTATGTACATGGCACTTGATGCAGAATGGTATAAAACACCTTGGTAACTTGATGAAAAAAGGAAGTCATTTCTTGGCTGATTTTAAGAAGTGCATGTATGATTATGACCAAGAGGAGAAGTTTGAGGCAGCTTGGAGCAAGTTGGTTTCAGAATTTAATATCAACGAAAACAATTGGGTGAAGTCGATGTATGCTATTAAGGAAAAATGGGCAGCATGTCACATGAAGTCAGCGTTCACGTTGGGAATGCGAAGCACTCAACTTAGTGAGAGTTTGAATTCTGATTTTAAGGCATGTATGACACCAAACATCAATGTTACTGATTTTTTCCAACACTTTGAGAGAGTTGTTGAGGAAAAGCGATATAATGAGTTAGTTTGTGAATATGAGTCTCGGCATAAACTACCACATTTAAGATACAGCTATTCACCAATTTTAGTGCAACTTGCACAAATATACACACCTGCCATTTTTGACACATTCCATAATGAATTTTCCTTATTTTTAGCTGCCTGCATTCGGGAAAGAAATATGTCCCAACTTCCATTTGAATATATCATCACCTTGGTCAATGAGGAAGGAGAGTGGAGAGTTCTATTTGATCCTGTACAATCATCTATATCATGTAGTTGTAGGAAGTTTGAGACTTTTGGAATACTTTGTTGCCATGCATTAAAGGTCTTTGAGGCAAATGATGTTAAGCTTGTCCCTCAACAATACATCTTAAAGAGGTGGACAAGAGATGCACGTAGTGGTATTATACATGACTTGTGTAAAAAAGTGATTGAGGTTCGACTACAGCAAAATGCAATGGCCAATGATGAAGGCGGTGTTCCAACATTGGCTGAACCAATTGAGACAACAGCAAAGGGGTATAAGAACCGGCCTGGGTTAAAGAGACAAAGACGATTAAAGAGTTGGATTGAACGTCAGCCTAAAACCATAAGCAAAGCTCAGACTGTACAATCTTCGTCATGTCATCAATCAAGGGATATTGGATCTTCAAATCAGATGGTCTTTCAAACATCAAGTATGGCACATCCATCACATGAGTTATCTCAAACAAATCAGTTTAGTATTGGATCTTCAAATCCGATGGTCTTTCAAACATCAAGTGTGGCACATCTATCGCATGAGTTATCTCAAACAAATCAGTTTAGTATTGGATCTTCAAGTCCGATGGTCTTTCAAACATCAAGTGTGGCACATCCATCACATGAGTTATCTCAAACAAATCAGTTTAGTTTCACTAGATTATTAATGGAGTCACTTAGACATGAATGA 2232 0.3768 MTTSATIPSVGMEFNSVDEAWRFWVEYGKQTGFGVRKDYINKRKKDKSIRSCRFVCCKEGHRVPDKRSYLVKNPRAETRTDCKARIALTVKNGKFVIHEFVEDHNHDLQLPQTTHMLASHRKISEVQAYEIEMAEDSGLRQKSSFGLMSAQAGGRTNLGYTRLDAKNYLKARRQRNMVYGEVGSLMKYFQHQLLKNPSFFHAHQMDCDEQITNVFWADAKMILDYGYFGEVVSLDTTYCTNHANRPLALFSGFNHYRGTVIFGAALLYDETAESFKWLFEVFLEAHGNKKPQTLFTDQDQAMAKALAEVMPETRHGLCTWHLMQNGIKHLGNLMKKGSHFLADFKKCMYDYDQEEKFEAAWSKLVSEFNINENNWVKSMYAIKEKWAACHMKSAFTLGMRSTQLSESLNSDFKACMTPNINVTDFFQHFERVVEEKRYNELVCEYESRHKLPHLRYSYSPILVQLAQIYTPAIFDTFHNEFSLFLAACIRERNMSQLPFEYIITLVNEEGEWRVLFDPVQSSISCSCRKFETFGILCCHALKVFEANDVKLVPQQYILKRWTRDARSGIIHDLCKKVIEVRLQQNAMANDEGGVPTLAEPIETTAKGYKNRPGLKRQRRLKSWIERQPKTISKAQTVQSSSCHQSRDIGSSNQMVFQTSSMAHPSHELSQTNQFSIGSSNPMVFQTSSVAHLSHELSQTNQFSIGSSSPMVFQTSSVAHPSHELSQTNQFSFTRLLMESLRHE* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0556 743 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 4 575 IPR031052 GO:0006355
Mal3g0556 743 Pfam SWIM zinc finger 519 546 IPR007527 GO:0008270
Mal3g0556 743 SMART 26again6 523 550 IPR006564 GO:0008270
Mal3g0556 743 Pfam MULE transposase domain 231 325 IPR018289 -
Mal3g0556 743 PANTHER OS03G0181600 PROTEIN 4 575 - -
Mal3g0556 743 Pfam FAR1 DNA-binding domain 22 109 IPR004330 -
Mal3g0556 743 ProSiteProfiles Zinc finger SWIM-type profile. 501 548 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0556 Mal-Chr3 21418679 21421081 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mal3g0556 MULE 1.3e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0556 - - cam:101507984 805.438