Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0540 ATGACGCTGGTAACAAGATTCTTGCCTCAATTAATTAAGAAAAATTTACTTTACAAATTCAAAAACGAGATTTTTGAAGGAAAATGTTACAACTTTGAAAACCTTGGTGTAGCTATTAATGGTGTGAGCTACAGAACTACAAGACACAGTTACAAACTGAATTTTTCAGTTTACTACCAAGGCCTGATTGGTGTTCTTTCTGGAGTGGGTACTGAAAGGGAATTGGAAAGGAATGGTAGCACTACAAAGTTGAATGTTATTGAACTTGCAGCAGAAGGGCATAAGATACAATGTACCCTGTTTGGAAGCTATGTTGACAAGCTTAATAGTTTTATTGCAAGTGGAGAGAACCAAAATGCTATTGTCATTGTTCAGCTGGCCAAAGCCAAGACATTTCAAGATAAAATACATTTGCAGAATTGTCTAAATTGCACAAAACTGGTTTTCAACCCTACTTGCCCTGATGGTATAAGCTTTAGGAACAGGGATGACTTTCTCTTTAATACACAAAGAAGAACAATGCAAGGGCTTAAGGATTCATCCACTGACTCTGTCTTTGTTGTTATTGGTACAATAGAGAGGATTGTGAATCAAGACAACTTTTGGTACACCGCCTGCATATGCTCTAAAGCTGTCATACCTGACTCCCAAATGTTTTTTTGTGAGAAATGTGACAAGCACGTGAAGAAGGTTTTTCCTAGGTATTGCTTAAAGATTAGAGCTATTGACCACATTGACTGTGCTACTCTGGTCATCTTTGACAAAAAATGCTCATCTCTTTTTAACAAAAGTTGTGCTGACATGTTTTCTCAACATGAGCAGGTTGTATCTGAGGGTCAACTTCCTCCTCCGATGCATGCATTTATTGGGCAAACATATCTTTTCAAAGTTGAGACAAAGGCTAAATTTAGTCCAAGATATGAAAGATCATTTTGTGTGAAAAAGATTTGTGTTGACCCTGTTGTGATTAATGAGTTTAAGGTTAAGTGGGACCATGAAGAGGCTTTATTTGCCAAACATGCAAATGAAAGTGCATCTCTAAGTTCATTGATAGACAAGGGAAAAGTAGGAGGGTTTGAGGGTTGTTCAAGTATGCTATCTCAGGAACCTATCTCATTATCTGACAATGTTGACAAAGGAAAGGGAAAAGCTTTGGCTGTTTGTTCTGAAATTGTTGCAGAGGATTTGATGCCTAAATTTGCAGGAGCTGTTTCTGAACCTGAGGTCAAATAA 1233 0.3747 MTLVTRFLPQLIKKNLLYKFKNEIFEGKCYNFENLGVAINGVSYRTTRHSYKLNFSVYYQGLIGVLSGVGTERELERNGSTTKLNVIELAAEGHKIQCTLFGSYVDKLNSFIASGENQNAIVIVQLAKAKTFQDKIHLQNCLNCTKLVFNPTCPDGISFRNRDDFLFNTQRRTMQGLKDSSTDSVFVVIGTIERIVNQDNFWYTACICSKAVIPDSQMFFCEKCDKHVKKVFPRYCLKIRAIDHIDCATLVIFDKKCSSLFNKSCADMFSQHEQVVSEGQLPPPMHAFIGQTYLFKVETKAKFSPRYERSFCVKKICVDPVVINEFKVKWDHEEALFAKHANESASLSSLIDKGKVGGFEGCSSMLSQEPISLSDNVDKGKGKALAVCSEIVAEDLMPKFAGAVSEPEVK* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0540 410 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 50 269 - -
Mal3g0540 410 SUPERFAMILY Nucleic acid-binding proteins 176 305 IPR012340 -
Mal3g0540 410 CDD RPA1_DBD_B_like 62 155 - -
Mal3g0540 410 Gene3D - 166 319 IPR012340 -
Mal3g0540 410 CDD RPA1_DBD_C 180 300 IPR013955 -
Mal3g0540 410 SUPERFAMILY Nucleic acid-binding proteins 61 164 IPR012340 -
Mal3g0540 410 Pfam Replication factor-A C terminal domain 186 302 IPR013955 -
Mal3g0540 410 Gene3D - 51 165 IPR012340 -
Mal3g0540 410 PANTHER REPLICATION FACTOR A 1, RFA1 50 269 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0540 Mal-Chr3 21029792 21032225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0540 62 269 Core DNA Replication Machinery Family AT4G19130 22.222 1.18e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0540 - - mtr:MTR_4g036240 441.039