Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0494 ATGTTGGAGCAAGAATTCCTCACTACCACCTCCTCCGCGGCTACCATAAGGTCTGCGGCGACGTGGCCACGCACATGTGACACGTGCCGCTCGGCCCCATGCGCGGTTTTCTGCCGCGCAGACTCGGCATATCTATGTGCCGCGTGTGATGCACGTATCCACGCGGCAAACCGTGTAGCCTCGAGGCACGAACGCGTCTGGGTCTGTGAGGCCTGCGAGCGTGCCCCGGCGGCTTTTCTTTGTAAAGCTGATGCTGCTTCTCTTTGCTCCTCTTGTGATGCTGATATCCACTCTGCTAACCCTCTTGCTAGCCGCCACCAACGTGTACCGATTCTTCCAATTTCCGGCTACCTTTACGGTCCTCCGGCCACTCTTTTAGGTGCCGAAGATGAAGGCTTTGTCCGCGGTGGTTGTGAGGTGGAGGAAGAGGAGGATGAAGGTGTTGATAATGATATGGAAGATGAAAATGAAGCAGCTTCATGGCTTTTGTTGAATCCTCTAAAGAACAACAATATCAATAGTAACAACAACAACAACAACAATAACAACAATACCAATGATCATAATCAACAGGGTAATAATGGATTTTTGTTTAGTGGAGAAGTTGATGAGTATTTGGACCTTGTTGATTGTAATTCTTGTGGTGGTGATGAAAACACTTTCACTACTAATAATACTCATCATGATGAGTATAGTCAACAACATCAACAACAAGATCATTATGGTGTTCCTCAAAAGAGCTATGTTGGTGATAGTGTTGTTCCTGTTCAACAGCAGCAGCTACACAATTTTCAACTTGGGGTGGAGTTTGAGTCTTCCAAAGCTGGATTCAGTTACAATAATGGTGGTTCTATTAGTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGTGTTGTACCAGAATCAACAATGAGGGATGTCTCAATGACCTATTCAAGAACTCCAAAAGGAACAGTTGACCTATTTTCAGGTCCTTCTATTCAAATGTCTTCCCATTTCTCTCCAATGGATAGAGAAGCCAGAGTCCTAAGGTACAGAGAGAAAAAGAAGACAAGAAAATTTGAGAAAACAATTAGGTATGCTTCAAGGAAAGCCTATGCAGAAACTCGGCCGCGTATCAAAGGTCGATTCGCAAAGCGAACAGATGTAGAAGCTGAAGTTGATCAAATGTTTTCCACAACACTAATTACAGAAGTTGGATATGGAATTGTTCCCTCTTTCTGA 1224 0.4444 MLEQEFLTTTSSAATIRSAATWPRTCDTCRSAPCAVFCRADSAYLCAACDARIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHQRVPILPISGYLYGPPATLLGAEDEGFVRGGCEVEEEEDEGVDNDMEDENEAASWLLLNPLKNNNINSNNNNNNNNNNTNDHNQQGNNGFLFSGEVDEYLDLVDCNSCGGDENTFTTNNTHHDEYSQQHQQQDHYGVPQKSYVGDSVVPVQQQQLHNFQLGVEFESSKAGFSYNNGGSISQSVSVSSMDVGVVPESTMRDVSMTYSRTPKGTVDLFSGPSIQMSSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSF* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0494 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 19 407 - -
Mal3g0494 407 MobiDBLite consensus disorder prediction 167 197 - -
Mal3g0494 407 ProSiteProfiles Zinc finger B-box type profile. 26 68 IPR000315 GO:0008270
Mal3g0494 407 ProSiteProfiles CCT domain profile. 338 380 IPR010402 GO:0005515
Mal3g0494 407 Pfam CCT motif 338 380 IPR010402 GO:0005515
Mal3g0494 407 Pfam B-box zinc finger 66 111 IPR000315 GO:0008270
Mal3g0494 407 CDD Bbox1_BBX-like 26 68 - -
Mal3g0494 407 CDD Bbox1_BBX-like 68 111 - -
Mal3g0494 407 ProSiteProfiles Zinc finger B-box type profile. 64 111 IPR000315 GO:0008270
Mal3g0494 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 19 407 IPR045281 GO:0009909
Mal3g0494 407 SMART bboxneu5 21 68 IPR000315 GO:0008270
Mal3g0494 407 SMART bboxneu5 69 111 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0494 Mal-Chr3 18800914 18803959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0494 19 407 C2C2-CO-like Transcription Factor Family AT3G02380 54.271 4.66e-132 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mal3g0494 zf-B_box 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0494 - - qsu:112016332 468.774