Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0437 ATGGTGGTTGTTTTGGCTTCATCCTCTGATGCTGATGGTGGGATTGGATGCTGGGACCTTCACACAGGTTCTGAGCAGATTCGCTACAAATCATTTTCTTCCCCTTGTCATGGACTTGTATCTGTTGGTGATCGCTTCCTTGCATCTTCTCAGCTTCGAGACACAGCAACTTCTGCTGGTTCTGTTTTCTTCTGGTCCTGGTCCAAGCCTCAAGTTGAAGTTAAGAGCTTTCCTGCTGAACCTATTACGCCTCTTGCTGCTAATCACAGCGGCACGTATCTAGTTGGCGGAGGTTTGTCGGGTGAAATATACTTGTGGGAGGTTGAAACCGGGAGATTGCTTAAGAAGTGGCATGGTCATAATACAGCTGTTACCTGCCTGGTATTTTCTGAAGATGACTCACTTCTCATATCTGGTTTTAAAAACGGAACCGTACGAGTTTGGTCTCTCTTAATGATATTTGATGATGTGAGAAGACGGGAAGCAAGCAAGATTTATGAGTATAGTTTTTCAGAGCACACCTTATGTGTAAATGATGTTGTGATTGGTTATGGAGGGTGCAATGCAATTATAGCTTCAGCATCAGATGATCGGACGTGTAAGGTATGGACCTTATCTAATGGAATGCTACAAAGAAATAAAGTGTTCCCTTCAAAAATTAAAGCCATTGCATTGGATCCAGCTGAACATGTCCTTTATGCTGGCAGTGAAGATGGAAAAATATTTATCGTTGCACTTAACACCACAAGAGTTACTACTAATAATCAAGTTTCATATATCACTGGTTCATTTTCTAACCACAGCAAGGCAGTTACTTGCTTAGCATATAGTGCCGCCGAGAATTTTTTAATATCTGGATCTGATGATGGAATGGTTCGAGTTTGGAATGCCAGTACTCATAACATCATCCGTGTGTTTAAACATGCCAAAGGACCAATAACTAATATTCTTGTTCTTAGACAAGAAAATGACTCAAGTAATCACTTGTCTTCTAATTTACAAGCAGCCCCAAAAAAGAAAGGAGCTCAGTTTCCTCCTTTGGAAAAATATGCAAATTCAATATACGACGACTCAGATAAAAAGACTATTGTCAGTCTTGGGGGTAGCAATACATGCATGGATGTTTCATACCTTAGTTCTCATATGATTTCTAGTTACAGTAAGGAACTTCAGAGTCAAGGTTCAGCTGCTGCTTCTGAATTGGAGATCGAGAAACTAAAACGTGATTGCCAAAAGTCAATGCAGATGGTTAATAAATGGAAGACAATGTATGAAAACTTGCATCAATTTTGCGTAAAGGAGATGCTAGATGAAAATGGGAAATAA 1326 0.3997 MVVVLASSSDADGGIGCWDLHTGSEQIRYKSFSSPCHGLVSVGDRFLASSQLRDTATSAGSVFFWSWSKPQVEVKSFPAEPITPLAANHSGTYLVGGGLSGEIYLWEVETGRLLKKWHGHNTAVTCLVFSEDDSLLISGFKNGTVRVWSLLMIFDDVRRREASKIYEYSFSEHTLCVNDVVIGYGGCNAIIASASDDRTCKVWTLSNGMLQRNKVFPSKIKAIALDPAEHVLYAGSEDGKIFIVALNTTRVTTNNQVSYITGSFSNHSKAVTCLAYSAAENFLISGSDDGMVRVWNASTHNIIRVFKHAKGPITNILVLRQENDSSNHLSSNLQAAPKKKGAQFPPLEKYANSIYDDSDKKTIVSLGGSNTCMDVSYLSSHMISSYSKELQSQGSAAASELEIEKLKRDCQKSMQMVNKWKTMYENLHQFCVKEMLDENGK* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0437 441 Pfam Neurobeachin beta propeller domain 100 321 IPR046851 -
Mal3g0437 441 PRINTS G protein beta WD-40 repeat signature 191 205 IPR020472 -
Mal3g0437 441 PRINTS G protein beta WD-40 repeat signature 136 150 IPR020472 -
Mal3g0437 441 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Mal3g0437 441 PANTHER WD REPEAT-CONTAINING PROTEIN 18 2 434 - -
Mal3g0437 441 Gene3D - 4 155 IPR015943 GO:0005515
Mal3g0437 441 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 117 150 - -
Mal3g0437 441 SUPERFAMILY WD40 repeat-like 9 318 IPR036322 GO:0005515
Mal3g0437 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 117 150 IPR001680 GO:0005515
Mal3g0437 441 ProSitePatterns Trp-Asp (WD) repeats signature. 283 297 IPR019775 -
Mal3g0437 441 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 299 - -
Mal3g0437 441 PANTHER WD-REPEAT PROTEIN 18 2 434 IPR045227 -
Mal3g0437 441 SMART WD40_4 163 204 IPR001680 GO:0005515
Mal3g0437 441 SMART WD40_4 110 149 IPR001680 GO:0005515
Mal3g0437 441 SMART WD40_4 257 296 IPR001680 GO:0005515
Mal3g0437 441 SMART WD40_4 206 245 IPR001680 GO:0005515
Mal3g0437 441 SMART WD40_4 70 107 IPR001680 GO:0005515
Mal3g0437 441 Gene3D - 156 381 IPR015943 GO:0005515
Mal3g0437 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Mal3g0437 441 Coils Coil 396 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0437 Mal-Chr3 16398716 16403470 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0437 80 338 Eukaryotic Initiation Factors Gene Family AT2G46280 23.106 2.85e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0437 K14829 - gmx:100791195 642.114