Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal3g0431 | ATGGGTTCTATTTGTTCTTGTTTGACTGTTGATGATTTTGAAGATTACATGAATCCACATAGCCATGTATATAGGAACTGTGTTTGTGTCGGTGGCTTGCTACAAAACGTTTTGAATGTTTATTCATCAATATTCCGTAGAAGGGAAATGCAGTCGCTTCCTTCATCTGTACAGGGGGCAGCATCTATGACTAATACAGCATCACTTGATAATTCTCTATCTGAGATATACCGTTCTCCTCCAAGGCCGTTGCCTTACGATGCAGACCCTAGGCATTTCCGCTCACAGCATGAAGGACTTGTTTCAAGACGTGAGAAGGGTTCCAGTCATTTGAATGATGAGTCAGAACCTCTAAGGGGTGATGTGGATATTGATCCAGAATCTTTCAGTTCAAGTGGTAAATGGAATGAATCCACTGGAAAAGATGGATCGAAGGAATACCGTTCCAAGTCCTCTGTTAGACTTTCGTCAGCAAAACTTACAACTGGAGCTGCGCTTGTGTACACATCATCAGAAGAGGAGGATGTTTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCAAAGATAGTGACAAAATGTAATCACCATTATCATCTTGGCTGCATATATGAGTGGATGGAGAGAAGTGACAGCTGTCCTGTTTGTGGGAAGGTGATGCTATTTGATGAAAATTAA | 681 | 0.4126 | MGSICSCLTVDDFEDYMNPHSHVYRNCVCVGGLLQNVLNVYSSIFRRREMQSLPSSVQGAASMTNTASLDNSLSEIYRSPPRPLPYDADPRHFRSQHEGLVSRREKGSSHLNDESEPLRGDVDIDPESFSSSGKWNESTGKDGSKEYRSKSSVRLSSAKLTTGAALVYTSSEEEDVCPTCLEEYTEENPKIVTKCNHHYHLGCIYEWMERSDSCPVCGKVMLFDEN* | 227 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal3g0431 | 226 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 225 | - | - | |
| Mal3g0431 | 226 | ProSiteProfiles | Zinc finger RING-type profile. | 177 | 217 | IPR001841 | - | |
| Mal3g0431 | 226 | SMART | ring_2 | 177 | 217 | IPR001841 | - | |
| Mal3g0431 | 226 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 225 | - | - | |
| Mal3g0431 | 226 | SUPERFAMILY | RING/U-box | 171 | 223 | - | - | |
| Mal3g0431 | 226 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 223 | IPR013083 | - | |
| Mal3g0431 | 226 | Pfam | RING-H2 zinc finger domain | 172 | 217 | IPR024766 | GO:0008270 | |
| Mal3g0431 | 226 | MobiDBLite | consensus disorder prediction | 74 | 152 | - | - | |
| Mal3g0431 | 226 | MobiDBLite | consensus disorder prediction | 85 | 123 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal3g0431 | Mal-Chr3 | 16329619 | 16334435 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal3g0431 | 1 | 225 | C3H Transcription Factor Family | AT5G15790 | 56.957 | 3.47e-90 | 263 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal3g0431 | - | - | gmx:100788192 | 389.808 |