Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0425 ATGGGAAGAGGTAGGGTTCAGCTGAAACGGATCGAGAACAAAACAAGCCAACAAGTAACATTTTTCAAAAGAAGAACTGGTCTTCTCAAGAAAGCTAATGAAATTTCTGTTCTTTGTGATGCTCAAGTTGCTTTGATTATGTTCTCTACCAAAGGAAAACTTTTTGAGTATTCCTCTGCACCAAGCATGGAAGACATTTTGGAACGATATGAGAGACAAAATCATACAGAGCTTACTGGAGCTACCAATGAAACACAGGGAAATTGGTCTTTTGAATACATGAAGCTCACTGCTAAAGTTCAAGTCTTGGAGAGGAACTTAAGGAACTTTGTGGGAAATGATCTGGACCCCTTGAGTGTGAAAGAGCTTCAGAGTTTGGAGCAACAGCTTGACACATCGCTTAAGCGTATCCGAACAAGAAAGAACCAAGTTATGAATCAATCCATCTCAGAGCTGCATAAAAGGGCAAGGACACTGCAGGAGCAAAACAGTAAGCTTGCAAAGACAAAGGAGAAAGAGAAGACAGTGAGTGAACATCCACAAAGATGCCTAGAAACCATAGGCATAGGACAATGTTCATCCACCCTCAACTTAATTTGTCAGCCAGCGGTGCTACCACCACCACACAGACTGGTTCCTTCTCTAAATCTCAGTGGGACTTTACAAGCAAGAGGGTCATTGGAATTGGAAGAAGCAGGTGATGCTCAAACTGTTCCTAGAAGCAATAATAGTCTCATACCACCATGGATGCTTCATCATCTCACAAACTAG 771 0.4189 MGRGRVQLKRIENKTSQQVTFFKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEYSSAPSMEDILERYERQNHTELTGATNETQGNWSFEYMKLTAKVQVLERNLRNFVGNDLDPLSVKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRARTLQEQNSKLAKTKEKEKTVSEHPQRCLETIGIGQCSSTLNLICQPAVLPPPHRLVPSLNLSGTLQARGSLELEEAGDAQTVPRSNNSLIPPWMLHHLTN* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0425 256 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 226 - -
Mal3g0425 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal3g0425 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal3g0425 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal3g0425 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mal3g0425 256 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Mal3g0425 256 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Mal3g0425 256 Pfam K-box region 84 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal3g0425 256 PANTHER MADS BOX PROTEIN 1 226 - -
Mal3g0425 256 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Mal3g0425 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal3g0425 256 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal3g0425 256 Coils Coil 123 169 - -
Mal3g0425 256 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0425 Mal-Chr3 16005713 16011922 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0425 1 243 MADS-box Gene Family AT1G26310 48.031 2.36e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal3g0425 K-box 7.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0425 K09264 - gmx:100788956 338.961