Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0392 ATGAATATGATATTGCTTGATGAAAAGTGTGGTCAAATTCATGCGACTATAAGGAAGCATCTGCTACCAGGTTTTAAGGATGAACTTGAAGAGGGCTCCACATACGTTATTGAAAAGTTCATGGTCGCACAAAATGATCCTACATTCAAGACGACCAACCATAAGTACAAATTGAACTTTATGGGAGGAACGAATGTTTTTAAGGTGAACGCTACTGAAATTCCTCTTAGGTCCTTCAACTTTGTGACTTTCCTGGAGATATTGGCTAGCCACAAGGAAGACCGTTTACTTGATGTTATTGGTCATGTTGTTGAAAAGGACATTATCAAAGAAAATGAGAAGAATGGCAAAAGTCACAAGGTTTTGGATGCGACTTTGGAGGATTTGCAGGGACATAGAATACACTGCACCCTATGGGATGATTATGCTGTTAGGATGCAAGAATGCTTGGATGCTCATGATTCCTCACTTCCTGTTGTGGTGATCTTTCAGCTGTGCAAACTTAAGAAGTATTTTGGTGCAATGGGCATATCTAATGCTTTTTATGGTACCAAGATGCTATTGAATCCAAACATACCTGAAGTATCTGATCATATAGAGAGGATGAATGGTGGTGATGTTGAGCTCACTCAAGTTGTAAGCCAGATGAGCGGCCCAACTATTGTACCTTTGTCTGATGATTTACTACAAACTCAGAGAATGACCATCGAGGACTTGATTGAAACTTCCAAGAAATGTGTTGCAAGTGTGTTGGCACGAACATGTGAGTTGGAGATTGATTCTGGATGGTTTTATCGTGCATGTAGCAAGTGTGCAAGTAGGATTACTGTCAGTAATGGAAAAATCTATTGCGACAAGTGCAGCATGCCAAGAACTTCCGTTCCTCGGTTCAAAATTAATGTTCAGGTGATAGATAATACTGGCTCAACCACGTTTGTGCTATTTGACCGTGTTGTGTCCCAAGTTGAAAACAATCAAATTGATTTCCGGTCTGATCTTAACATATTTGCCGACAAGCGAATGCTTTTCAAGGTCGAAGTCGGTGATTCCAACCTGTACCGTAATTGGCGCAGCTATACTGTTAAGAAGCTCACTATGGATGAAGAGATCATTAAGAAGTTTTTGACTATGCATGGAATACATGTAAATATTGAAGGAGTTGGTTCAAATAATAAAGATGATGTTGCTGCGGTTGATTTGGATGTGACTCCAACTAGCAAAAGTTTGGGAAAGAGACCTGCTGATAGTTCCGCATCATTGGATGACATTGATGTCATGGGAGAGGACGCTTCTACTACAAAACTACCAAAGAGAATCAACAATGTCAATCTTGAAGCTGATGAGTGA 1347 0.4001 MNMILLDEKCGQIHATIRKHLLPGFKDELEEGSTYVIEKFMVAQNDPTFKTTNHKYKLNFMGGTNVFKVNATEIPLRSFNFVTFLEILASHKEDRLLDVIGHVVEKDIIKENEKNGKSHKVLDATLEDLQGHRIHCTLWDDYAVRMQECLDAHDSSLPVVVIFQLCKLKKYFGAMGISNAFYGTKMLLNPNIPEVSDHIERMNGGDVELTQVVSQMSGPTIVPLSDDLLQTQRMTIEDLIETSKKCVASVLARTCELEIDSGWFYRACSKCASRITVSNGKIYCDKCSMPRTSVPRFKINVQVIDNTGSTTFVLFDRVVSQVENNQIDFRSDLNIFADKRMLFKVEVGDSNLYRNWRSYTVKKLTMDEEIIKKFLTMHGIHVNIEGVGSNNKDDVAAVDLDVTPTSKSLGKRPADSSASLDDIDVMGEDASTTKLPKRINNVNLEADE* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0392 448 CDD RPA1_DBD_B_like 98 202 - -
Mal3g0392 448 CDD RPA1_DBD_A_like 1 66 - -
Mal3g0392 448 Gene3D - 72 210 IPR012340 -
Mal3g0392 448 Gene3D - 225 375 IPR012340 -
Mal3g0392 448 PANTHER BNAC07G49340D PROTEIN 10 375 - -
Mal3g0392 448 Pfam Domain of unknown function DUF223 3 88 IPR003871 -
Mal3g0392 448 Gene3D - 1 68 IPR012340 -
Mal3g0392 448 PANTHER REPLICATION FACTOR A 1, RFA1 10 375 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal3g0392 448 MobiDBLite consensus disorder prediction 405 427 - -
Mal3g0392 448 SUPERFAMILY Nucleic acid-binding proteins 79 204 IPR012340 -
Mal3g0392 448 SUPERFAMILY Nucleic acid-binding proteins 232 331 IPR012340 -
Mal3g0392 448 SUPERFAMILY Nucleic acid-binding proteins 2 69 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0392 Mal-Chr3 14919555 14921963 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0392 2 354 Core DNA Replication Machinery Family AT5G08020 24.324 8.66e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0392 - - mtr:MTR_1g105785 421.394