Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0333 ATGGCGTTCTTTAGTAAAATGGGAAAGTTACTAAAAAATTCTGCTGTCAAGCACATCAATCATGATTTATCTATGTCTACTCCTTCGTTATTTCAAGCAATTAGATCCATGTCATCTGCAAAGCTTTTTATTGGAGGTGTTTCATATAGCACTGATGATAGCAGTCTCCGAGAAGCTTTTGCTCAATATGGAGAAGTTCTTGATGCAAAGATTATCATGGATCGTGAAACAGGAAGATCCCGAGGTTTTGGCTTCATAACTTTTGCAACAAGCGAGGAAGCATCGTCTGCCCTTCAAGCCATGGATAACAAGGAACTTCATGGTCGGACAGTACGAGTAAACTATGCTACAGAAAGGTCACGTACTGGGTTTGGTGGTGGTGGTGGCTATGGTGGTGGCGGCGGCTATGGTGGTGGCGGCGGCTATGGTGGTGGCGGCGGCTATGGTGGTGGCGGCAGCTATGGTGGTGGCGGTAGCTATGGTGGTGACGGCAGCTATGGTGGTGGTGGCTATGGTGGTGGTACATATGGTCGCAATGATAATATCAGTGGAAGCTATGGAAGTGGTGGTGGTGTCCGAGACAGCTATAGCGGTGGCCATACCGGGACTACTTATGCTGCTGGTAGCCACCAAGATGACGGAATAGACGCAGATAAGAATGAATTCGACAACCATGTGACGGAGAACAATGATCAATCTGATGACTATGCTGAGACCCGTAGGTGA 726 0.4752 MAFFSKMGKLLKNSAVKHINHDLSMSTPSLFQAIRSMSSAKLFIGGVSYSTDDSSLREAFAQYGEVLDAKIIMDRETGRSRGFGFITFATSEEASSALQAMDNKELHGRTVRVNYATERSRTGFGGGGGYGGGGGYGGGGGYGGGGGYGGGGSYGGGGSYGGDGSYGGGGYGGGTYGRNDNISGSYGSGGGVRDSYSGGHTGTTYAAGSHQDDGIDADKNEFDNHVTENNDQSDDYAETRR* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0333 241 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 158 - -
Mal3g0333 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Mal3g0333 241 MobiDBLite consensus disorder prediction 212 241 - -
Mal3g0333 241 MobiDBLite consensus disorder prediction 190 241 - -
Mal3g0333 241 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 158 - -
Mal3g0333 241 SMART rrm1_1 41 114 IPR000504 GO:0003723
Mal3g0333 241 PRINTS Eggshell protein signature 36 52 - -
Mal3g0333 241 PRINTS Eggshell protein signature 154 164 - -
Mal3g0333 241 PRINTS Eggshell protein signature 183 201 - -
Mal3g0333 241 PRINTS Eggshell protein signature 125 140 - -
Mal3g0333 241 Gene3D - 31 154 IPR012677 -
Mal3g0333 241 SUPERFAMILY RNA-binding domain, RBD 25 150 IPR035979 GO:0003676
Mal3g0333 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0333 Mal-Chr3 11819043 11821456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0333 30 120 C2H2 Transcription Factor Family AT2G19380 34.066 7.21e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0333 K12741 - gmx:100807155 230.72