Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0259 ATGGGGATGAAACTTACAAAGCAGGGTTCACCACCCAAAATTAGCAGTCCAACAAGTTTGCAATTACATCAACGAATGATCCATTACCTTACCAATAATTTTATTCGTAACTTGGTATCTAAGCAAAGGAGAAGAATGCTTATTGCTGGTTATGATCTTGACATGTCATATATCACAGATAGAGTATTAGCAATGTCATTTCCTGCTGAACGTATGAGAGCAATGTATAGAAATCCTCTCTGGCAAGTCAAATCTGTGTTGGATATGAGACATCTTGAACATTATAAGGTCTATAATCTGTGTATAGAAGAACATTATGATCCAGCACACTTCTATGGTCGTGTGGAACCATACCCTTTTGATGACAATCACGTTCCATCTCTTGAAATGATTAAATCTTTCTGTGAAAGTGTGGATTCATGGCTATTACGTGACCCCAAAAATATTGCCGTTATTCATTGCATGGCAGGTAAAGGTAGAACTGGTTTGATGGTGAGTTCATACCTAACATATTGCGGCATGACAGCAAATGAAGCTCTTCAATTATATGCAGATAGAAGGACTACCAATAATGAAGGAGTATCAATACCAAGCCAACGTCGTTATGTAGGGTACTGGGAAAGCCTACTTTCTGTACCTAGAGGCGCTGGATATGGACCTCCAAAAGTGACTTTGCCTCAACCGTGTAGCAGAGAACTGCGGCGAGTCCGGTTGTATGACACTGTCAACATTGACACAGTATTCTTTGTTGTATCAGAAATGCAGGAGATTCCAAATGAGGTCTACCGTCCATCAGTGGAAGTTTGTAGAAGCAGCTGTAGAGAGGTTAAGAAAGGTTATCAGAGAACAAACAGTCCTCGCTATTATATTTCTATTCCTAAAGGTGATGAAGATGGAAAACAATCAGAGATAGAAGAACAACCTCGTGTTGTAGTTCAAATGGACACAGAGACTCCTGCAATATATCAGAAATCTTGTTTGGACCATTATTTTGATAAACCTATTCAAGTAACAGGAGATGTACGTGTGATATTCTACGAAAAAATGATTGGAGGCCGTCTTTTCTACTGCTGCTTTAATACATCTTTTATTAGGAACAGCTTACTACAGCTCACAGTAAATGAATTGGACAAAGTTGGGAAGAAAGGAAGATCAATATGTGGCCCTACATTCTGCCTGGAACTATTGTTTGGTCCAGCTAATACAGGGTATTCATCATCAAGCATATCTATTGGTGAAAATTCTAGTGATGATTCATTATAA 1263 0.3872 MGMKLTKQGSPPKISSPTSLQLHQRMIHYLTNNFIRNLVSKQRRRMLIAGYDLDMSYITDRVLAMSFPAERMRAMYRNPLWQVKSVLDMRHLEHYKVYNLCIEEHYDPAHFYGRVEPYPFDDNHVPSLEMIKSFCESVDSWLLRDPKNIAVIHCMAGKGRTGLMVSSYLTYCGMTANEALQLYADRRTTNNEGVSIPSQRRYVGYWESLLSVPRGAGYGPPKVTLPQPCSRELRRVRLYDTVNIDTVFFVVSEMQEIPNEVYRPSVEVCRSSCREVKKGYQRTNSPRYYISIPKGDEDGKQSEIEEQPRVVVQMDTETPAIYQKSCLDHYFDKPIQVTGDVRVIFYEKMIGGRLFYCCFNTSFIRNSLLQLTVNELDKVGKKGRSICGPTFCLELLFGPANTGYSSSSISIGENSSDDSL* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0259 420 ProSiteProfiles Phosphatase tensin-type domain profile. 44 213 IPR029023 -
Mal3g0259 420 PANTHER BNAC03G16750D PROTEIN 1 402 - -
Mal3g0259 420 CDD PTP_PTEN 54 209 IPR045101 GO:0016791
Mal3g0259 420 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 132 187 IPR000387 GO:0016311|GO:0016791
Mal3g0259 420 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 50 210 IPR029021 -
Mal3g0259 420 ProSitePatterns Tyrosine specific protein phosphatases active site. 152 162 IPR016130 GO:0016311|GO:0016791
Mal3g0259 420 SMART PTEN_C2_2 226 399 IPR014020 -
Mal3g0259 420 ProSiteProfiles C2 tensin-type domain profile. 244 400 IPR014020 -
Mal3g0259 420 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 402 - -
Mal3g0259 420 Pfam C2 domain of PTEN tumour-suppressor protein 307 397 IPR014020 -
Mal3g0259 420 Gene3D Protein tyrosine phosphatase superfamily 30 212 IPR029021 -
Mal3g0259 420 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 308 399 IPR035892 -
Mal3g0259 420 Gene3D - 273 402 - -
Mal3g0259 420 Pfam Tyrosine phosphatase family 143 184 IPR026893 GO:0004721
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0259 Mal-Chr3 8974338 8977918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0259 1 404 Protein tyrosine phosphatase (PTP) family AT5G39400 66.667 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0259 K01110 - gmx:100809938 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g0259 3 8974338 8977918 Mal3g0259 3 8974338 8977918 ECH