Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0240 ATGGGTTGTGTGAACTCCAAGAAAGCTCTAGCCGGAGGAGGCAATATGCTTTCTCCGGTTGGACCTTACGTTCATTCGAATTCTTCTCGAAAAAGGAGCAATGGTTCAGGTAGAAGCATGGTGGTGGAAGTTTCTGCTCATTCTTCTAGAGGAAATTCTGGTGTTATTGTTGGGACACAACAACAGGTTGATACGAAACCGAAACCGGAGGAGTGGAAAAAGGGAGATTTGAATGTTAAGATTGGTTCACATAGGTTTGTTGAAGGTGAACAGATTGCTGCTGGTTGGCCTTCTTGGCTTACTTCTGTTGCTGGTGAAGCCATTCATGGTTTGGTTCCTCTCAAAACTGATTCTTTTGAGAAATTAGATAAGGTTGGACAAGGTACATATAGCAGTGTTTTCCAAGCACGCGAAGTTGAGACAGGGAGAATGGTTGCCTTGAAGAAGGTGCGGTTAGACACACTTCAACCCGAGAGCATTAGGTTCATGGCGCGGGAGATAATAATCCTCCGCACACTTGACCACCCGAACACCATGAAATTAGAGGGTATAATCACTTCACAACTATCAAACAGTGTATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCCTTTTAGCTAACCCTGATATCAAGTTCACAGACGCACAGATTAAGTGTTACATGAGACAACTATTGAGTGGAATCGAGCATTGTCACCTACGAGGTATCATGCATCGAGACATTAAAGTATCAAATATATTAGTTAACAATGAAGGCATTCTCAAGATAGGAGACTTTGGACTAGCCAATACTGTTAGCCCGAATAACAAGCACCCTTTAACAAGTCGTGTAGTGACTCTATGGTATCGCCCTCCCGAGCTTTTGATGGGATCAACAAACTATGGAGTTACAGTGGACCTGTGGAGCATAGGGTGTGTGTTTGCTGAACTTTTTCTGGGCAAGCCCATCCTTAAGGGGAGAACCGAGGTGGAACAATTGCATAAAATATTTAAGCTTTGTGGATCTCCACCTGAAGAGTTTTGGAAAAAGAGTAAGCTTCCGCTTGCAACAATGTTTAAGCCTCAGACTAGTTACAAAAGCTCCCTTGAGGAGAGGTGTCAAGGTTTTCTTCCTGAAACTGCTGTGAACCTACTTGAGATCTTACTCTCCGTTGATCCTTCCAAACGTGGTACTGCCTCCTCTGCACTTATGTCCGAGTATTTCAACACTGCGCCATACGCTTGTAGTCCATCATTCCTGCCAAAGTATCTACCAAGCAAAGAAATGGATGCTAAAAACCGGGAAGACATGCACAGGAAAAAGAATGGAGGTAAAGTGCGAGAGCGCGAGGCTGTAACATCAGGAAGGCAAAGACGGGCCCATAAAGTTCTTCAGGATCCTAATACTGCCGGCAAACCAGCTTTGAAAGAGAATACTCAAAATGCTCGTAGAGACGATGATGGTAAAGCACATCATACAAAAGGAAAAGTTGGACCTGTTAACAAAGAGCAACAAAAGCATTTGTATGATGCAAAATCAGAGGCTGCACAAGTGTCGAATGGTTACAACGGCTATAGTGCGTACTCAGGACCAGTACCAGTCTCAGGATCTAGCGGCTTTACATGGGCGAAAAGAAGAAAACCAGACGCTTCATCCGTATTATCAGACGGTTCAAGAAGCAAAATCAGTGCAATGGATCCGAACTTTGCAAAAGGCACTTACGATTTAACGAAACATGGGATAGAAGTTTCTGAAAGAAGACATAATTCCAACACAAGCCATCGCGATGAGACTTCTAAGCGTGCATTACAAAAGAACCAGGGTCGTAATGTAGAATCGTTTGATGTAGCTGAGTTATACCATTCCAAATACTTCATGGATTTTGATCTCACAGATAAAACAGATGCTCCAATAAATGCACAGGACCACAAAAATTACAACGAACCTGTGGAACAACCAATACCAACTATGATCCAAACAAGTAAAAATGATGAGTTATCACAATGGAATGAAAATAATGTGTGGCGGAAATCTGGTCGGAAATCAAGATTGGGAAGAGAGGGTGCTTGA 2058 0.4291 MGCVNSKKALAGGGNMLSPVGPYVHSNSSRKRSNGSGRSMVVEVSAHSSRGNSGVIVGTQQQVDTKPKPEEWKKGDLNVKIGSHRFVEGEQIAAGWPSWLTSVAGEAIHGLVPLKTDSFEKLDKVGQGTYSSVFQAREVETGRMVALKKVRLDTLQPESIRFMAREIIILRTLDHPNTMKLEGIITSQLSNSVYLVFEYMEHDLAGLLANPDIKFTDAQIKCYMRQLLSGIEHCHLRGIMHRDIKVSNILVNNEGILKIGDFGLANTVSPNNKHPLTSRVVTLWYRPPELLMGSTNYGVTVDLWSIGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKSKLPLATMFKPQTSYKSSLEERCQGFLPETAVNLLEILLSVDPSKRGTASSALMSEYFNTAPYACSPSFLPKYLPSKEMDAKNREDMHRKKNGGKVREREAVTSGRQRRAHKVLQDPNTAGKPALKENTQNARRDDDGKAHHTKGKVGPVNKEQQKHLYDAKSEAAQVSNGYNGYSAYSGPVPVSGSSGFTWAKRRKPDASSVLSDGSRSKISAMDPNFAKGTYDLTKHGIEVSERRHNSNTSHRDETSKRALQKNQGRNVESFDVAELYHSKYFMDFDLTDKTDAPINAQDHKNYNEPVEQPIPTMIQTSKNDELSQWNENNVWRKSGRKSRLGREGA* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0240 685 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Mal3g0240 685 CDD STKc_CDK9_like 119 404 - -
Mal3g0240 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Mal3g0240 685 SUPERFAMILY Protein kinase-like (PK-like) 113 409 IPR011009 -
Mal3g0240 685 MobiDBLite consensus disorder prediction 1 53 - -
Mal3g0240 685 PANTHER CYCLIN-DEPENDENT KINASE 77 579 - -
Mal3g0240 685 ProSiteProfiles Protein kinase domain profile. 119 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal3g0240 685 Pfam Protein kinase domain 119 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal3g0240 685 PANTHER CELL DIVISION PROTEIN KINASE 77 579 - -
Mal3g0240 685 SMART serkin_6 119 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal3g0240 685 MobiDBLite consensus disorder prediction 426 499 - -
Mal3g0240 685 Gene3D Phosphorylase Kinase; domain 1 110 201 - -
Mal3g0240 685 MobiDBLite consensus disorder prediction 577 605 - -
Mal3g0240 685 MobiDBLite consensus disorder prediction 474 499 - -
Mal3g0240 685 MobiDBLite consensus disorder prediction 426 461 - -
Mal3g0240 685 Gene3D Transferase(Phosphotransferase) domain 1 202 443 - -
Mal3g0240 685 MobiDBLite consensus disorder prediction 577 599 - -
Mal3g0240 685 MobiDBLite consensus disorder prediction 21 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0240 Mal-Chr3 8304882 8310256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0240 116 445 Core Cell Cycle Gene Families AT5G10270 46.087 1.87e-103 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Mal3g0240 Pkinase 3.5e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0240 - - lja:Lj1g3v2982400.1 976.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g0240 3 8304882 8310256 Mal3g0240 3 8304882 8310256 ECH
Mal3g0240 3 8304882 8310256 Mal6g4605 6 129896810 129900081 ECH