Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0171 ATGGACATAACCCCAACACCACCACCAACAACAACACCAATAACACCAACCATTTTAACAACAACATCAACAACAACCTTAACTAAATCACCAGAACATGAAACTGAAACACCCACCAAATTCCCAACCTCAACAACTCCAAAAATCTCACCTTTTTCAAATGGTGTCCTCAAACGCCTCCACCACCACCACCACCACCTCAACCACCACAACAACCACCATGTAACAATTACCTACAAAGAATGTCTCAAGAACCATGCAGCAAACCTAGGTGGTCATGCCCTAGATGGATGTGGTGAATTCATGACATCTCCCACAGCAACACCAACTGACCCAACATCCTTAAAATGTGCTGCTTGTGGCTGCCACCGTAACTTCCACCGTCGTGAACCTGAAGAACCACCACTCTCCACCACCACCACACATGTCATTGAATATCAACCTCACCACCGTCATCAACCACTTCCACCACCACCCTTCTCCACCCGGAGCCCAAATTCATCCTCACCACCACCGATCTCCTCCTCTTACTACCCCTCCGCCCCTCACATGCTCCTCGCTCTCTCCGCCGCCTTGCCGGAAAACGTTTCAGCTCCAAACACAACCATGATGATGAATTCACACTCCCACAGTTCAAGAAAGCGTTTCAGAACAAAATTCACTCAAGATCAGAAAGAGAAGATGCTGAAATTTGCTGAGAAAGTTGGGTGGAAGATGCAGAAAAAAGATGATGAATTTACTCATGAGTTTTGTAATGAGATTGGTGTTGATCGTAGTGTTCTTAAAGTTTGGATGCATAACAACAAGAACACTTTTGCTAAACGAGAAAACAATAACAATAATAATAATGATGAGATTAATGTTGGTGTTAAGAGTTTTCAGCTACCTGCTATTGAAGATGAAGAGCACAAGAATGTTGAGATTCATGGTCTTAATCATCATAATCATTATCAGAATGAAGGTGGAGTTGTTGGAGTAACTGTTCTTCGTGCTAATGGTTCATCGTCTTCTTCTTAA 1017 0.4326 MDITPTPPPTTTPITPTILTTTSTTTLTKSPEHETETPTKFPTSTTPKISPFSNGVLKRLHHHHHHLNHHNNHHVTITYKECLKNHAANLGGHALDGCGEFMTSPTATPTDPTSLKCAACGCHRNFHRREPEEPPLSTTTTHVIEYQPHHRHQPLPPPPFSTRSPNSSSPPPISSSYYPSAPHMLLALSAALPENVSAPNTTMMMNSHSHSSRKRFRTKFTQDQKEKMLKFAEKVGWKMQKKDDEFTHEFCNEIGVDRSVLKVWMHNNKNTFAKRENNNNNNNDEINVGVKSFQLPAIEDEEHKNVEIHGLNHHNHYQNEGGVVGVTVLRANGSSSSS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0171 338 Pfam ZF-HD protein dimerisation region 77 131 IPR006456 -
Mal3g0171 338 MobiDBLite consensus disorder prediction 148 176 - -
Mal3g0171 338 MobiDBLite consensus disorder prediction 15 49 - -
Mal3g0171 338 SUPERFAMILY Homeodomain-like 203 274 IPR009057 -
Mal3g0171 338 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 79 130 IPR006456 -
Mal3g0171 338 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 78 130 IPR006456 -
Mal3g0171 338 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 14 300 - -
Mal3g0171 338 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 300 - -
Mal3g0171 338 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 213 270 IPR006455 -
Mal3g0171 338 Gene3D - 199 274 - -
Mal3g0171 338 MobiDBLite consensus disorder prediction 1 49 - -
Mal3g0171 338 MobiDBLite consensus disorder prediction 151 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0171 Mal-Chr3 6205591 6206607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0171 17 277 ZF-HD Transcription Factor Family AT5G15210 50.000 2.04e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mal3g0171 ZF-HD_dimer 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0171 - - gmx:100789447 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g4646 6 130713758 130714741 Mal3g0171 3 6205591 6206607 PCT