Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0169 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGTGTTAAAAAAGGACCATGGACTCCTGAAGAAGATATCATACTTGTTACTTATATACAAGAACATGGTCCTGGAAATTGGAGGGCTGTTCCAACCAAGACAGGGTTGTCAAGATGCAGCAAAAGTTGCAGACTTAGATGGACTAATTACCTAAGGCCAGGAATCAAAAGGGGTAACTTCACTGAACAAGAGGAGAAGATGATTATCCATCTTCAAGATCTTTTAGGAAATAGATGGGCTGCAATAGCGTCATATCTTCCACAAAGAACAGATAATGACATAAAAAACTATTGGAATACTCATTTGAAAAAGAGGCTCAAGAAATCACAAACATGTAATAATGCTGAAGGCATTAATTTTGAAGAAGAAAAATTTTCAGCATCTCAAAGGATTCCAAGAGGTCAATGGGAAAGAAGACTTCAAACAGATATTCATATGGCCAAAAAAGCACTTAATGAAGCACTTTCACCACAAAAATTATCTACTTCAAACCCTTCAAATAGTAACTCATTTTCTTCCACTAAAGAACTAGGTCAAAAATCTTTTTGCTATGCTTCAAGTGCAGATAACATAGCTCGTTTACTTAAGGGTTGGATGAAAAATCCAATAAAATCTTGTGTAAGTACTAATTCAGCTGTGACACAAAATTCCTTCAACAACTTTGATTCTGCTTCTAGTAGTGGAACAAAGGGTGAAATATTGTCGGAGACATTTGAGTCTTTGTTTGGTTTTGAGCCTTTGGAGTCTTTGGAGTCATCAAATTCTGAATTCTCTCATCAATCTTTGTCGCCAGACGCAACGGTTTTACAAGATGAAAGCAAGCCTGATGTTGGTTCAGAAACAATGCCATTTTCTTTGCTTGAGAAATGGCTTCTTGATGAAGCTAGTTGCCCTGAAAAAGTGGTATTAGGTTGTGGTGGTGATCATGCTCAAGTTTTCTAA 972 0.3704 MGRPPCCDKEGVKKGPWTPEEDIILVTYIQEHGPGNWRAVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKRLKKSQTCNNAEGINFEEEKFSASQRIPRGQWERRLQTDIHMAKKALNEALSPQKLSTSNPSNSNSFSSTKELGQKSFCYASSADNIARLLKGWMKNPIKSCVSTNSAVTQNSFNNFDSASSSGTKGEILSETFESLFGFEPLESLESSNSEFSHQSLSPDATVLQDESKPDVGSETMPFSLLEKWLLDEASCPEKVVLGCGGDHAQVF* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0169 323 CDD SANT 69 112 IPR001005 -
Mal3g0169 323 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 314 - -
Mal3g0169 323 SMART sant 13 63 IPR001005 -
Mal3g0169 323 SMART sant 66 114 IPR001005 -
Mal3g0169 323 CDD SANT 16 61 IPR001005 -
Mal3g0169 323 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mal3g0169 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mal3g0169 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 314 - -
Mal3g0169 323 MobiDBLite consensus disorder prediction 265 285 - -
Mal3g0169 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mal3g0169 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mal3g0169 323 Gene3D - 68 139 - -
Mal3g0169 323 Gene3D - 13 66 - -
Mal3g0169 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mal3g0169 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Mal3g0169 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0169 Mal-Chr3 6134232 6135992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0169 1 317 MYB Transcription Factor Family AT5G62470 50.704 1.15e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal3g0169 Myb_DNA-binding 1.2e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g4648 6 130868285 130870176 Mal3g0169 3 6134232 6135992 PCT