Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0160 ATGGATTTGGTAAGGGAATTTGAACTCATCAATGATATCACAGACAAAAAAGATTTTTGGAAACTTGCAGTCAAAGTGAAAGATAAGTGGAATGTAATGGCTAATGGCAAACACCACTTTGAGATGCTCATTGTAGATGCAAAGGGAGCTGATATTCAAGTGATAATTCCATCTAACTTCAAAACTGATTATGACAAAATGGTTGAAAACAAGAATTACACTATAACTAATTTTCAAGTCTTGAAAAATGATGCAATGTTCAAAGCAAGTAATCATAAGTACAAACTAATTTGGACTGGTGGAACATCTGTTGAAGAGGGTACCAATCATCAGATTCCTGAAGTTGCTCCAAAATTCAAACCTTTTTCTGATATTGTGGCCGGGAAATGGCGGGCCGATCTGTTAGTTGATGTGATAGGTGCAGTAGTTCAAATGGGTTACCAACAACTAGAGAAATCCAAAAAGATTCAAGTTAATTTCTTAATGACAGATTTGAGTAATCAAACAATCAACTGCACATTGTGGGAGGAGTATGCTGCCAAGTTTATCAAATTCAACCAGGAAAGGAAAGACACTGGACCAATTGTAGTTATGATTAAGTATGGTAAAATCAAAGAGGAAGGCAAATTCCCTCTTACTGTTTCAAATACTTATAGTCTGACAAAGCTGTTTATCAATGAGGATGTCCCTGAAATTACCAACTTCAGGAAATTGCTAACTCAAAATCAGCAAATTGAGCCTATGAACCAAATTGTTTGTAGTCAATCTTCTCAAACTTGGAGTCAATCTTCAAGCAGTTCACAAATTTCAGCTGATGACAATTTCTTGAAAAATTCACTGGTGCTGCCTCTTCGTGATATAATTCAACTTCCTCAGGTTTATTAA 885 0.3548 MDLVREFELINDITDKKDFWKLAVKVKDKWNVMANGKHHFEMLIVDAKGADIQVIIPSNFKTDYDKMVENKNYTITNFQVLKNDAMFKASNHKYKLIWTGGTSVEEGTNHQIPEVAPKFKPFSDIVAGKWRADLLVDVIGAVVQMGYQQLEKSKKIQVNFLMTDLSNQTINCTLWEEYAAKFIKFNQERKDTGPIVVMIKYGKIKEEGKFPLTVSNTYSLTKLFINEDVPEITNFRKLLTQNQQIEPMNQIVCSQSSQTWSQSSSSSQISADDNFLKNSLVLPLRDIIQLPQVY* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0160 294 Gene3D - 9 109 IPR012340 -
Mal3g0160 294 SUPERFAMILY Nucleic acid-binding proteins 118 244 IPR012340 -
Mal3g0160 294 PANTHER REPLICATION FACTOR A 1, RFA1 28 258 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal3g0160 294 CDD RPA1_DBD_B_like 137 232 - -
Mal3g0160 294 Pfam Domain of unknown function DUF223 41 130 IPR003871 -
Mal3g0160 294 CDD RPA1_DBD_A_like 21 104 - -
Mal3g0160 294 Gene3D - 110 250 IPR012340 -
Mal3g0160 294 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 28 258 - -
Mal3g0160 294 SUPERFAMILY Nucleic acid-binding proteins 6 107 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0160 Mal-Chr3 5894707 5896067 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0160 20 236 Core DNA Replication Machinery Family AT2G06510 25.532 2.25e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0160 - - mtr:MTR_2g450060 325.479