Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0159 ATGTCTAGTCGAAGGTCAAGGCAACAATCAGGAGGCTCTACACGGATCTCTGATGACCAAATCATTGACCTTGTTTGCAAATTGCGTCAACTTGTTCCTGAGATTCGTAATAGGCGTTCGGACAAGGTACCAGCTTCTAAGGTCCTACAAGAAACCTGCAACTATATCAGAAACTTACAAAGAGAGGTTGATGATTTAAGCTTGAGATTGTCTCAGTTGTTGGCCACAATTGATTCTGATAGTGCTGAAGCTTCTATAATTAGGAGCCTACTTAACCAATGA 282 0.4149 MSSRRSRQQSGGSTRISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSLRLSQLLATIDSDSAEASIIRSLLNQ* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0159 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Mal3g0159 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 23 78 IPR036638 GO:0046983
Mal3g0159 93 PANTHER TRANSCRIPTION REGULATOR 1 91 - -
Mal3g0159 93 Pfam Helix-loop-helix DNA-binding domain 20 60 IPR011598 GO:0046983
Mal3g0159 93 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Mal3g0159 93 Gene3D - 2 88 IPR036638 GO:0046983
Mal3g0159 93 Coils Coil 49 76 - -
Mal3g0159 93 CDD bHLH_AtPRE_like 12 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0159 Mal-Chr3 5831458 5834225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0159 13 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 72.500 4.93e-34 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal3g0159 HLH 0.0002 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0159 - - jre:109002575 142.124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g0159 3 5831458 5834225 Mal2g4866 2 110108572 110110040 ECH
Mal3g0159 3 5831458 5834225 Mal3g0159 3 5831458 5834225 ECH
Mal3g0159 3 5831458 5834225 Mal6g3775 6 110134934 110137289 ECH
Mal6g1937 6 41835096 41836050 Mal3g0159 3 5831458 5834225 ECH
Mal5g2530 5 72365390 72366736 Mal3g0159 3 5831458 5834225 ECH
Mal6g4663 6 131045225 131054916 Mal3g0159 3 5831458 5834225 PCT