Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0112 ATGGCTTTAGGTGCAAGTAAAATTACCTTTGTTTTGTTGGTTTTAGCCATTACTGTTCCATGCCTTGAAGCTGGTATTGCTGAGTTTGATGATTACCTCAAAGAACAAGCTAACCTGGCTCGTGAAATTGCTTTTAAATCCTATGTACCAAATCCTGAAAACATTACAACCGACATCAATGTTCATGTTCATATGGCATTGGAAGCTGCATTGAAGCAAGAAGAAGTGTATTTAAATGAAACAAGGAGGGAACTAATGAGCCAAAAAAATCGTGGTAAAAAGGGTAAAAGAGGAAGATGTGTTGCCACCAATCCAATTGACAGTTGTTGGAGGTGTAGACCAGATTGGGCGGATAACCGTCAATTGTTAGCCAAATGTGGAAAAGGATTCGGTAGAAAGGCCACAGGAGGACTTGGTGGAAGGATCTATGTTGTCACAGATCCTTCCGACAATGATATGGTGAACCCAAAACCTGGCACTCTCCGATTTGGTGCCGTTCAAAGAGGACCACTTTGGATTACTTTCGGAAGTAGCATGGTCATTACACTTACTCAAGAGTTAATGGTTTCATCCGACAAGACCATCGACGGTCGTGGAGCCAATGTTCAAATTAGGGATGGTGCTGGAATTACCATGCAATTTGTGAACAATGTCATCATTCATGGTCTTCGCATAAGGAACATTAAGGCTAGGAATGGTGGTATGATTAGAGACTCTTTTGATCATATTGGTCTAAGAACAAGGAGTGATGGTGATGCTATCTCTGTTTTTGGTTCATCAAACATTTGGATTGATCATATTTCCTTATCTGAATGTGAGGATGGTCTTGTTGATGTTATTCAAGGCTCTACTGCAGTCACCATCTCAAATTGCCACATGACCAAACATAATGATGTGATGTTGTTTGGAGCTAGTGATACCTATCAAGATGATAAGATTATGCAAGTTACAGTTGCATTCAACCATTTTGGACAAGGATTGATCCAAAGAATGCCAAGGTGTAGATGGGGATTTTTCCATGTTTTGAACAATGATTATACACATTGGATAATGTATGCAATTGGTGGTAGCTCAGGCCCAACAATTCTTAGTCAAGGAAATCGTTTCATTGCTCCTAACAACAATGCTGCAAAAACAATTACACATAGAGATTATGCACCAGAATCTGTTTGGTCAAAATGGCAATGGAGATCAGAAGGTGATTATTTCATGAATGGTGCTACATTTATTCAATCTGGTCCTCCTATTAAGAGTCTTCCATTCAAAAAAGGGTTCCTAATGAAACCAAGGCATGGATCACAGGCTAATAGGCTTACACAAAATTCTGGGGCACTCAATTGCATTGTGGGTAGGCCTTGCTAG 1362 0.3994 MALGASKITFVLLVLAITVPCLEAGIAEFDDYLKEQANLAREIAFKSYVPNPENITTDINVHVHMALEAALKQEEVYLNETRRELMSQKNRGKKGKRGRCVATNPIDSCWRCRPDWADNRQLLAKCGKGFGRKATGGLGGRIYVVTDPSDNDMVNPKPGTLRFGAVQRGPLWITFGSSMVITLTQELMVSSDKTIDGRGANVQIRDGAGITMQFVNNVIIHGLRIRNIKARNGGMIRDSFDHIGLRTRSDGDAISVFGSSNIWIDHISLSECEDGLVDVIQGSTAVTISNCHMTKHNDVMLFGASDTYQDDKIMQVTVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWIMYAIGGSSGPTILSQGNRFIAPNNNAAKTITHRDYAPESVWSKWQWRSEGDYFMNGATFIQSGPPIKSLPFKKGFLMKPRHGSQANRLTQNSGALNCIVGRPC* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0112 453 Coils Coil 71 91 - -
Mal3g0112 453 SUPERFAMILY Pectin lyase-like 104 444 IPR011050 -
Mal3g0112 453 PRINTS Pollen allergen Amb family signature 250 271 IPR018082 -
Mal3g0112 453 PRINTS Pollen allergen Amb family signature 330 349 IPR018082 -
Mal3g0112 453 PRINTS Pollen allergen Amb family signature 424 447 IPR018082 -
Mal3g0112 453 PRINTS Pollen allergen Amb family signature 150 175 IPR018082 -
Mal3g0112 453 PRINTS Pollen allergen Amb family signature 186 202 IPR018082 -
Mal3g0112 453 PRINTS Pollen allergen Amb family signature 352 371 IPR018082 -
Mal3g0112 453 PRINTS Pollen allergen Amb family signature 126 143 IPR018082 -
Mal3g0112 453 PRINTS Pollen allergen Amb family signature 394 418 IPR018082 -
Mal3g0112 453 SMART amb_all 178 375 IPR002022 -
Mal3g0112 453 Pfam Pectate lyase 186 369 IPR002022 -
Mal3g0112 453 Gene3D - 103 446 IPR012334 -
Mal3g0112 453 PANTHER PECTATE LYASE 18-RELATED 6 453 IPR045032 GO:0030570
Mal3g0112 453 Pfam Pectate lyase, N terminus 26 85 IPR007524 GO:0030570
Mal3g0112 453 PANTHER PECTATE LYASE 6 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0112 Mal-Chr3 4169621 4172294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0112 1 453 Polysaccharide Lyase AT1G14420 54.762 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0112 K01728 - gmx:100785801 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g0112 3 4169621 4172294 Mal5g4216 5 113015616 113017522 ECH
Mal3g0112 3 4169621 4172294 Mal3g0112 3 4169621 4172294 ECH
Mal3g0112 3 4169621 4172294 Mal6g3792 6 110564893 110567294 ECH