Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0056 ATGGTTTCTCTGAAACTGCAGAAGAGGCTATCAGCTAGCGTGCTGAAGTGCGGTAGAGGGAAAGTCTGGCTTGATCCCAATGAAGTCAATGAAATCTCCATGGCCAATTCCAGACAAAACATTAGGAAGTTGGTTAAGGATGGTTTTATTATTAGGAAGCCAACCAAGATTCACTCCCATTCACGTGCTCGCAGGATGAAGGAAGCCAAGAGGAAGGGACGCCACTCCGGATATGGTAAGCGCAAGGGTACAAGGGAGGCAAGGCTTCCTACCAAAATTCTTTGGATGAGGAGGATGCGTGTGCTTAGACGATTGCTTCGAAAGTACAGGGAGGCAAAGAAAATTGACAAACACATGTACCATGATATGTACATGAAGGTGAAGGGTAATGTTTTCAAGAACAAGAGAGTCTTGATGGAGAGCATTCACAAGTCCAAGGCCGAGAAGGCAAGAGAGAAGACATTGTCTGACCAGTTTGAGGCAAAGCGTGTAAAGAACAAGGCAAGCAGGGAAAGGAAATTTGCTCGGCGTGAGGAGCGATTCGCTCAAGTGAGTAATTTCGGTCCCGGTGAAAAGCCATCAGCAGCACCCACTGCTCAACCTGATACAACACCCCAACCTGCCCAAGCGCCAAAGAAAACCAAGAAGTGA 651 0.4731 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSHSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRVKNKASRERKFARREERFAQVSNFGPGEKPSAAPTAQPDTTPQPAQAPKKTKK* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0056 216 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Mal3g0056 216 MobiDBLite consensus disorder prediction 161 180 - -
Mal3g0056 216 Gene3D - 57 188 - -
Mal3g0056 216 PANTHER 60S RIBOSOMAL PROTEIN L19 1 216 IPR039547 GO:0003723|GO:0003735|GO:0022625
Mal3g0056 216 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Mal3g0056 216 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Mal3g0056 216 MobiDBLite consensus disorder prediction 57 79 - -
Mal3g0056 216 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Mal3g0056 216 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Mal3g0056 216 PANTHER RIBOSOMAL PROTEIN L19 1 216 - -
Mal3g0056 216 MobiDBLite consensus disorder prediction 161 216 - -
Mal3g0056 216 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Mal3g0056 216 MobiDBLite consensus disorder prediction 197 216 - -
Mal3g0056 216 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Mal3g0056 216 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0056 Mal-Chr3 2061349 2064229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0056 1 216 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 81.019 2.80e-124 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0056 K02885 - ming:122060556 342.813