Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g0043 ATGCGGATGAGTTGTAATGGTTGTAGAGTACTAAGAAAAGGTTGCAGTGAAAACTGTAGCATAAGACCTTGTTTGCAATGGATCAAAAGCCCTGAATCACAGGCTAATGCCACCGTCTTTCTCGCCAAATTTTACGGCCGTGCCGGACTCATGAACCTCGTCAACGCTGGCCCTGAACATCTTCGTCCAGCTATTTTTCGTTCGTTGTTGTACGAAGCATGTGGTAGAATAGTGAACCCAATTTACGGTTCAGTCGGTTTATTATGGTCCGGAAGCTGGCAGCTATGTCAAGCGGCGGTGGAAGCCGTTTTGAAAGGCGCGCCGATCACGCCGATAACTTCGGAAGCAGCTGCTAATGGGAGGGGTCCACCACTCAAAGCCTATGACATACGCCATGTGTCGAAAGACGAAAACTCGGCCGCTTCGACCGAGTTAACTCAGCAGCGAGTTAAGACTCGATCTCGGAAGCGGTCGAGTTTAGCCAAGCCGAAGATACAAGAAGAGAAAAAGAGTAATAATGATAACAAATTTGAATCTGGTTCAACTGAGCCAACCGGTTCGGTTGAACCGGTTGAAGAGGTGATGAACCGGTCAGCGAGTCATGAGTCGTCGATTAGCCACCAGTCTGAGGTGGTTGCGGTGGTGGATGAGGAGAGTAAAGAGAGTGAGAGTGAGACTTCGATGATCTTATTTAGAGATGAACCGGAGTTGAACCGGGATTTGAAGAGGGTGGACCGGACCAGGGAGAGTGGAGAGGAAAATGTTGGGTTGGATCTGACTCTTGGGCTTGAACCGGTTTCACGTGTTTATCACGTGGTTCCTGTGAAGAAAAGAAGAGTTGAGTTGAAGGATTGTGGTGGTGGCTCATGGAATGTGGAGTTGGGGCTTCAATATCCGGCTTAG 903 0.4884 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSEAAANGRGPPLKAYDIRHVSKDENSAASTELTQQRVKTRSRKRSSLAKPKIQEEKKSNNDNKFESGSTEPTGSVEPVEEVMNRSASHESSISHQSEVVAVVDEESKESESETSMILFRDEPELNRDLKRVDRTRESGEENVGLDLTLGLEPVSRVYHVVPVKKRRVELKDCGGGSWNVELGLQYPA* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g0043 300 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Mal3g0043 300 MobiDBLite consensus disorder prediction 134 209 - -
Mal3g0043 300 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 281 - -
Mal3g0043 300 MobiDBLite consensus disorder prediction 160 176 - -
Mal3g0043 300 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 281 - -
Mal3g0043 300 PIRSF AS2 1 296 IPR017414 -
Mal3g0043 300 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g0043 Mal-Chr3 1514487 1515670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g0043 1 280 AS2 family AT3G02550 61.972 5.26e-116 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mal3g0043 LOB 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g0043 - - lja:Lj1g3v3317390.1 420.624