Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g5615 ATGGAACTGAAGAAATGCGGAAACGACGTTTACTTTTGCAACAAATGGCAACAGTTTGCAGAATACTATTCTATAGGGTATGGTTCCTACTTGTGTTTCAAATATGAGGGGGATTCAAAGTTTACTGTCGTTATATTTGATGTAACTTCTGTTGAGATTTGCTATCCACTCAAAACTCAAAGTACAAATGGAGAAAGAACCACAGAGTGTCGTAGTCCTAGGAAAAGGTCCAGGGTTGAAACAAGCGAGAATCAAGGGGAAAATGTCAAAAACATGTCTGAGTATGCTTCTAAAAGAGCAGAGGAAGCTGCCAAAGAATTCAACCCAAAAAACCCTTATTTTCGTTTCAAAATTGTTAAGGGAAAATATGCGTATGTTTCTGCTGATTTTGCTCCAAAGTATCTGAAGCCAAATGTTCCTATAAAGCTCCAAAATTCTCGTGGACTGCAGTGGGAAGTTTTTGGCATATTGCATGATGCCAGATCATCATCAGCAATGCAAATATCGAGGGGATTTTGTAAATTTCAAGGGGACAACAATCTGTCACCTGGAGATTATTGTGTGTCTGAGCTGATCAAGAAGAACCCGGTTAGAATTCCGGATGAATTTATAACAAGATTTGGGAATGAACTCAAGAATGTTGCTACCATTGTTGTTCCTGATGGTTGCTATTGGGAAATGGAACTGAAGAAATGCGGAAACGATGTTTACTTTTGCAACAAATGGCAACAGTTTGCAGAATACTATTCTATAGGGTATGGTTCCTACTTGTGTTTCAAATATGAGGGGGATTCAAAGTTTACTGTCGTTATATTTGATGTAACTTCTGTTGAGATTTGCTATCCACTCAAAACTCAAAGTACAAATGGAGAAAGAACCACAGAGTGTCGTAGTCCTAGGAAAAGGTCCAGGGTTGAAACAAGCGAGAATCAAGGGGAAAATGTCAAAAACATGTCTGAGTATGCTTCTAAAAGAGCAGAGGAAGCTGCCAAAGAATTCAATCCGAAAAACCCTTATTTCTGTTCCAAAATCGTTAAGGAAACATATGCGTATGTTACTTCCAATTTTGCTCCAAAGTATCTGAAGCCAAATGCTCCTATAAAGATCCAAAATTCTGATGGTGAGGAGTGGGAAGTTTTTGGTATAGTGCATGATGCCAAAGCATCATCAGCAATGAAATTAACGAGGAGATTTTCAATATTTCAAAGGGACAACAATCTGTCACCTGGAGATTATTGTGTGTTTGAGCTGATCAAGAATAATCCGGTGGTGCTAAAAGTCACAATGTTTCGCGCGGCTGACTATGGCGATTAA 1314 0.3874 MELKKCGNDVYFCNKWQQFAEYYSIGYGSYLCFKYEGDSKFTVVIFDVTSVEICYPLKTQSTNGERTTECRSPRKRSRVETSENQGENVKNMSEYASKRAEEAAKEFNPKNPYFRFKIVKGKYAYVSADFAPKYLKPNVPIKLQNSRGLQWEVFGILHDARSSSAMQISRGFCKFQGDNNLSPGDYCVSELIKKNPVRIPDEFITRFGNELKNVATIVVPDGCYWEMELKKCGNDVYFCNKWQQFAEYYSIGYGSYLCFKYEGDSKFTVVIFDVTSVEICYPLKTQSTNGERTTECRSPRKRSRVETSENQGENVKNMSEYASKRAEEAAKEFNPKNPYFCSKIVKETYAYVTSNFAPKYLKPNAPIKIQNSDGEEWEVFGIVHDAKASSAMKLTRRFSIFQRDNNLSPGDYCVFELIKNNPVVLKVTMFRAADYGD* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g5615 437 Pfam B3 DNA binding domain 192 273 IPR003340 GO:0003677
Mal2g5615 437 Pfam B3 DNA binding domain 351 432 IPR003340 GO:0003677
Mal2g5615 437 ProSiteProfiles B3 DNA-binding domain profile. 1 49 IPR003340 GO:0003677
Mal2g5615 437 Gene3D - 194 276 IPR015300 -
Mal2g5615 437 Gene3D - 1 50 IPR015300 -
Mal2g5615 437 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 79 197 - -
Mal2g5615 437 SUPERFAMILY DNA-binding pseudobarrel domain 1 48 IPR015300 -
Mal2g5615 437 CDD B3_DNA 189 273 IPR003340 GO:0003677
Mal2g5615 437 PANTHER B3 DOMAIN-CONTAINING 1 85 - -
Mal2g5615 437 CDD B3_DNA 338 431 IPR003340 GO:0003677
Mal2g5615 437 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 305 432 - -
Mal2g5615 437 Gene3D - 318 436 IPR015300 -
Mal2g5615 437 Gene3D - 92 193 IPR015300 -
Mal2g5615 437 SUPERFAMILY DNA-binding pseudobarrel domain 335 431 IPR015300 -
Mal2g5615 437 MobiDBLite consensus disorder prediction 63 87 - -
Mal2g5615 437 MobiDBLite consensus disorder prediction 68 83 - -
Mal2g5615 437 SMART B3_2 340 433 IPR003340 GO:0003677
Mal2g5615 437 SMART B3_2 187 275 IPR003340 GO:0003677
Mal2g5615 437 SUPERFAMILY DNA-binding pseudobarrel domain 107 193 IPR015300 -
Mal2g5615 437 PANTHER B3 DOMAIN-CONTAINING 305 432 - -
Mal2g5615 437 PANTHER B3 DOMAIN-CONTAINING 79 197 - -
Mal2g5615 437 ProSiteProfiles B3 DNA-binding domain profile. 182 275 IPR003340 GO:0003677
Mal2g5615 437 SUPERFAMILY DNA-binding pseudobarrel domain 196 274 IPR015300 -
Mal2g5615 437 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 1 85 - -
Mal2g5615 437 MobiDBLite consensus disorder prediction 294 309 - -
Mal2g5615 437 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 192 311 - -
Mal2g5615 437 PANTHER B3 DOMAIN-CONTAINING 192 311 - -
Mal2g5615 437 MobiDBLite consensus disorder prediction 289 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g5615 Mal-Chr2 135179102 135184904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g5615 3 55 B3 DNA Binding Superfamily AT3G18990 45.283 3.20e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal2g5615 B3 5.9e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g5615 - - mtr:MTR_3g005420 478.404