Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g5614 ATGAAAGCCATACTTCCTCCTCCCATGCATGTCAAAGAAATAAGAATTCCAGATGAGTTTATAACAAGATTTGGGAATGAACTCAACAATGTTGTTACGATTATTGTTCCCGATGGTTGTGAATGGGAAATGGAACTGAAGAAATATTTTAAGTATGAAAGGAATTCAAAGTTTAATGTTGTTATATATGATACAACTTCTGTTGAGATTTCCTATCCATTCAAAGCTGGGAGGACTAATGGAGAACCAAAGGATGCTGCCAACAGAAACAACCCAAAAAACCCTTCTTTTCTTTCCAAATCCTATGACTGCCGATATGCGTATGTTCCTGCTGAATTCGCTGCAGAGTATCTGAAGCCAAATGTTCGGTTCAAGCTCCAAAATTCTCAAGGAAAGCAGTGGGAAGTTTATAGTGTAATGAATGGAGTTTTTTATGAGTTTGAGCTGATCAAGAGGAAGCCTGTTGTTGTGTTACAAGTTACAGCGTCTCACACGGCGGAATCCAAACATTTTAAGAAGGCCATACTTCCGTCACCCATTCATGCCAAACAAATTAGAATTCCAGAAGGTTTTATAACAAAATATGGGAATAAACTCAAGAATGTTGCTACAATAACTGTTCCGGATGGTCTTATTTGGAAAATGGACTTGATGAAATGTGACGAGAACGTTTTCTTTTGCAACAAATGGAAACAGTTTGCAGAATATTATTCTATAGGATACGGTTACTACCTGTCTTTTAAATATGAAGGGAATTCAAATTTTAGTGTTATTATATTTGATGCGACTTCTGTTGAAATTTGCTATCCATTCAGAACTCCAGGTACTAATGGAGAACCAAACACAGAGTGTTATAGTCTTAGGAAAAGGTCCAGGGTTGAAACAAGTGAGAGTCAAGGGAAAAAGGTCAAAAGCATGTTTAAAGATGCTTCTAAAAGGGCAGAGGATGCTGCCAATGCATTCAACCCAAATAACCCTTATTTTCGTTCAAAGTGCGCCAAGGGAAGATATGTGTATGTTTCTTCTAAGTTTGCTTCAAAGTATCTGAAGCCAAATGGTCCGATCAAGCTCCAAAATTCTCATGGAGAACAGTGGGAAGTTTCTTGTATATTCTATAATCCCAAATCATCATCAATGCGAATAGTGAAGGGAGTTATGAAATTCGAAAGGGACAACAATCTGACACATGAAGATTATTGTGTGTTTGAGCTGATCAAGAAGAAGCCGGTTGTGCTAAAAGTCACAATGTTTCGCGCGGCTGACTATGGCGATTAA 1275 0.378 MKAILPPPMHVKEIRIPDEFITRFGNELNNVVTIIVPDGCEWEMELKKYFKYERNSKFNVVIYDTTSVEISYPFKAGRTNGEPKDAANRNNPKNPSFLSKSYDCRYAYVPAEFAAEYLKPNVRFKLQNSQGKQWEVYSVMNGVFYEFELIKRKPVVVLQVTASHTAESKHFKKAILPSPIHAKQIRIPEGFITKYGNKLKNVATITVPDGLIWKMDLMKCDENVFFCNKWKQFAEYYSIGYGYYLSFKYEGNSNFSVIIFDATSVEICYPFRTPGTNGEPNTECYSLRKRSRVETSESQGKKVKSMFKDASKRAEDAANAFNPNNPYFRSKCAKGRYVYVSSKFASKYLKPNGPIKLQNSHGEQWEVSCIFYNPKSSSMRIVKGVMKFERDNNLTHEDYCVFELIKKKPVVLKVTMFRAADYGD* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g5614 424 PANTHER B3 DOMAIN-CONTAINING 50 81 - -
Mal2g5614 424 PANTHER B3 DOMAIN-CONTAINING 166 292 - -
Mal2g5614 424 PANTHER B3 DOMAIN-CONTAINING 1 48 - -
Mal2g5614 424 ProSiteProfiles B3 DNA-binding domain profile. 170 263 IPR003340 GO:0003677
Mal2g5614 424 SUPERFAMILY DNA-binding pseudobarrel domain 167 262 IPR015300 -
Mal2g5614 424 Gene3D - 162 264 IPR015300 -
Mal2g5614 424 CDD B3_DNA 169 261 IPR003340 GO:0003677
Mal2g5614 424 SUPERFAMILY DNA-binding pseudobarrel domain 330 417 IPR015300 -
Mal2g5614 424 SMART B3_2 171 263 IPR003340 GO:0003677
Mal2g5614 424 SMART B3_2 327 420 IPR003340 GO:0003677
Mal2g5614 424 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 1 48 - -
Mal2g5614 424 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 166 292 - -
Mal2g5614 424 SUPERFAMILY DNA-binding pseudobarrel domain 7 64 IPR015300 -
Mal2g5614 424 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 50 81 - -
Mal2g5614 424 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 84 141 - -
Mal2g5614 424 CDD B3_DNA 329 418 IPR003340 GO:0003677
Mal2g5614 424 Gene3D - 306 423 IPR015300 -
Mal2g5614 424 ProSiteProfiles B3 DNA-binding domain profile. 355 420 IPR003340 GO:0003677
Mal2g5614 424 Pfam B3 DNA binding domain 173 262 IPR003340 GO:0003677
Mal2g5614 424 Pfam B3 DNA binding domain 333 419 IPR003340 GO:0003677
Mal2g5614 424 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 293 419 - -
Mal2g5614 424 PANTHER B3 DOMAIN-CONTAINING 84 141 - -
Mal2g5614 424 PANTHER B3 DOMAIN-CONTAINING 293 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g5614 Mal-Chr2 135172993 135175954 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g5614 2 72 B3 DNA Binding Superfamily AT3G18990 29.897 7.11e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal2g5614 B3 3.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g5614 - - mtr:MTR_3g005420 527.324