Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g5597 ATGTTTTATTCTCAAACGTTTTTGGCGCGAAAAGGACCACTCTCAACGGTTTGGATTGCTGCTCATCTTCAACACAGACTCAAGAAATCTCAGTATGCTTCTACTGATATTCCCTCCACTGTTCAACATATAATGGATCCTGGGGTTCCCATTGCATTGAGGATGTCAGCTCACCTACTCTTAGGTGTTGTTCGTATTTATTCGAAAAAAGTTGATTATCTTCTTAACGACTGCAATCTCGTTCGTACTGTTTTATACAAAGTATTCGCTTCTGTATCAAATAACACTTTACCTGAGGATGCGAGGCAAGCACCGGTTCATTCTATCACTATGCCAGCCACTTTTGACCTTGACGCGCTGAACTTAGGCTATGAAATAGATATTAACGGGTATGAGGATGTTCACATGAGGAATCAAGATGAGATTACTCTTGCAGAGTCACATACTACCGGTCATACTAGTGGTGATAACCATCATCATAACTTTCAGGATCCCATTACGAAACAGACAATGCCAATGGAAACTTTTCTTGATCCCTCTAATGATAATGATACTATTGGAAATCCACCAGACCACCTTGGGTTTAATGATACCATATCCAATATGGATATCGACCAACATGTCAATGAAAAAGATCAGACTCCTGAAATGATTGATGAGATTCATGCTGGACCGTCCTCAACTGAACCACCTAGACCACCAACTCCAGCTGCTTCTCAAGATGGTGGCTCAGATGCAGTTCACGGAGGTCGAATTTCTGAACCAACTTTAGAGCGTGGTTTCTCTGATGCTAGGCTTATTCCTACCCCTCAAATGGAGCAGCAAATGGAGCAGGGACAGGATCAGAGGCATCAAAGAGGAAGGAGGAGAAATCAATTCTACGATGATCCTATAGTGTTACCAAACAGAGTCATGAAGAAAGCCCTTAATGATACTCGCAACATACGGCGGAGGAGAAGGGACGTTTCTACATCTTTCGCTACATGGGAGTCGAAGAGCAAAAGGTTAAAGGAGGGTATTTTTGATCAGCCTTTATTTACAGGAATGTGCCAGGAACTTATAAACATACACAAAAGAGAATACATATGTTCCAAACCCCATTTGGTCATATCTGAGGAAGATCATCCGGATAATACTACTAGCACTCCTCCAATTAACCAAGTCGCTGATGAGCCAATAGCTGATGCACCTGAGATTATTGTTAATGCATCTGGTGTGGAGGATATTGAACACATTCGTTCTGTTGCTGATGATCCCCTACCCACTATCCCAACTCAGAGCATGGACACTGAACCCATTACTGAAGGTGCTCACAAGAGTCCTGCTAAAGGAGGTCTTGCGACTCCTACTTCGGTTTCTGAGGCAATGGAGATACCGTATGGTGCAACATCACCTCGAGCTCATGCATCTGAAATTGGAAGCCCTAGCACATATCCAGATAACATATTTCAGAACCGTGACTTTTCAGATAACATACTTCACAACCATGACTTTTCAGATACTAATCAATTGATCAATTCTGCTGAAAAAGACGAGCTTTGGTTTCTCGAAGAAGATAACAACACACCGGCCACAGCCAGTTCACAAAGTACGAGCAAAAGTATTGACACATTGTCTGGGAGGACTAGGGGTCTAGCTCAATATTTAAAAGATTATTCTCCATGTACAACAATTCCGGAGCATCCTGCTGAAGATTTCAGCTTGAACAAGATCTTGGATGGAAAAACTAGAAAGATTGCTGCTAGGATGTTCTTTGAAGTTTTGGTGTTAAAGACTCATGATCTTATTGATGTACAACAAGAGGAGCCTTATGGTGATCATCTTAGAGCATCTCCATCGCTTGGTTCCACAATGTTCTTAACATTTAAGAACCTGTTCCAATTTCATGTTCCATTGGAGTTGAGTGGGGTGGAATACAAACTATCAGCAACAGAACGTGTGTTTCTCTTTAGAGGGATTTATGAGAAGAAAAAAAAACTCATACCCACCTTCAACCACACCAACTTTGAATCAATTGTTTTTTGCGAAGAAGGTCAGATTCGTCTACCACGTTCTTTGGATGCTGCTTTTGAAGCACATGACATTGAATTTGGTGGGAGTGATATTGAGGGTATGGGTAATAGTTCTTTATCAAAGAGTGGTTCATGTTCTTGTGAAGAAGATATTGAAGACAGTAATGATGAGGGTGAAGGTTGCAATTTTAAAGATGAATTTGCTGTCGACTCGGTTACCGATTTAGAGAAAATTAACTTCAAACAAATAAGTATTGAGGAAGTAATGCGATATCATTTTCCAGATCGCGAAGTTGCCTTTATGTTCTATAATTGGGAAGGCATTAGAGAGGAAAAATACATCAATTCAACATCTCATAAGAGAGAGCACAAACCGTTGAGTAGGTGTGGATGTCAAGCTAAAGTAAAAGTTCACCTTGATGTTAGTTGCGATCGTTGGTACATTAAACTTTTTGATGATGACCACAACCATTCCTTTGTTAAGGAAAAGTTTGAGGGGATGCTTCCTGCACATAGAAAGATGAGTGAGTATGACAAATACCAGATGAACACAATGAGGAAATCAGGAATTCCAACCACACGAATTTATGGTTATTTTGCGGAACAAGCTGGTGGGTATGAAAAACTTGGTTACTCCAAAAGAGACATGTATAATGAGCAATTAAAGAGAAGGAGGTATAGGAATTCTGATGCTGAAGAAGCGGTAGAGTTTTTGAAGGCTATGTCATCGCGGGATGATAAGATGGAGATAGAGGCTGATTTTTTATCTTCTCATGGTGATGTTTTCCTTCAAACCCAACACCCACATCTAGAAAGATCGGCTTTTAAGCTGTACACAAAGGCAATATTTAGGCTAGTTAGACCCGTGTTGGAAAGAGCTTGTCGTTGTAAGGTAGAGAATGTATCACAAAATGGTTCCATATTTGACTACACTGTGCGTAAATATCCTAGACAAGATATTGAATGGATTGTCTCATTTTGTCAACATAGACCTGTCTTTGAATGCACTTGTAGGAGGTTAGAGACATTAGGCATTGCTTGTGAACATGTGATGATTGTTTTGATATTTTTGAACATTGTAAACCTTTCTGATTGTCTAGTGCTGCATAGATGGACCAAATATGCTAAAGATGTAGTTGACGCGTCGAATGCTAATAGTTCAAGTCAGAGGAACCCAACTTTTATAACTACATACGTTACATTTGTAGAGAGATGTAAGAGGATGGTTAATGCAGCATTGTGTTGCGGTAAGCCAGAATTTTTGCGTGGTTGTATTGAAATGGTTGAGACACAGACAGGATTGTTGGAGGCGGTTGGTAGGGGTGAAGATGTTCCCATGTCTAAATTGGGTACACAAACAGAAGTTTCGTTAGGTAATCCACCTCAGGTGAGGAGAAAGGGTGGTGGAGGAGCATCATCCTCAGTGTTAGGAACTGGAAAATCAACTCGTAGGACAATTAAGTGTGGAATTTGCGGAACATTGGGTCATAACAGCCAATCATGTCATCTTCAGGGAGAGGCACTTCTTCAATCTCAAAGTAATTACATAGAGTCATTTAATTATGGGGATGAAGACATTGATGAAGACAAGGATGGTTGTAACGTCTTCATGGTATAG 3630 0.4047 MFYSQTFLARKGPLSTVWIAAHLQHRLKKSQYASTDIPSTVQHIMDPGVPIALRMSAHLLLGVVRIYSKKVDYLLNDCNLVRTVLYKVFASVSNNTLPEDARQAPVHSITMPATFDLDALNLGYEIDINGYEDVHMRNQDEITLAESHTTGHTSGDNHHHNFQDPITKQTMPMETFLDPSNDNDTIGNPPDHLGFNDTISNMDIDQHVNEKDQTPEMIDEIHAGPSSTEPPRPPTPAASQDGGSDAVHGGRISEPTLERGFSDARLIPTPQMEQQMEQGQDQRHQRGRRRNQFYDDPIVLPNRVMKKALNDTRNIRRRRRDVSTSFATWESKSKRLKEGIFDQPLFTGMCQELINIHKREYICSKPHLVISEEDHPDNTTSTPPINQVADEPIADAPEIIVNASGVEDIEHIRSVADDPLPTIPTQSMDTEPITEGAHKSPAKGGLATPTSVSEAMEIPYGATSPRAHASEIGSPSTYPDNIFQNRDFSDNILHNHDFSDTNQLINSAEKDELWFLEEDNNTPATASSQSTSKSIDTLSGRTRGLAQYLKDYSPCTTIPEHPAEDFSLNKILDGKTRKIAARMFFEVLVLKTHDLIDVQQEEPYGDHLRASPSLGSTMFLTFKNLFQFHVPLELSGVEYKLSATERVFLFRGIYEKKKKLIPTFNHTNFESIVFCEEGQIRLPRSLDAAFEAHDIEFGGSDIEGMGNSSLSKSGSCSCEEDIEDSNDEGEGCNFKDEFAVDSVTDLEKINFKQISIEEVMRYHFPDREVAFMFYNWEGIREEKYINSTSHKREHKPLSRCGCQAKVKVHLDVSCDRWYIKLFDDDHNHSFVKEKFEGMLPAHRKMSEYDKYQMNTMRKSGIPTTRIYGYFAEQAGGYEKLGYSKRDMYNEQLKRRRYRNSDAEEAVEFLKAMSSRDDKMEIEADFLSSHGDVFLQTQHPHLERSAFKLYTKAIFRLVRPVLERACRCKVENVSQNGSIFDYTVRKYPRQDIEWIVSFCQHRPVFECTCRRLETLGIACEHVMIVLIFLNIVNLSDCLVLHRWTKYAKDVVDASNANSSSQRNPTFITTYVTFVERCKRMVNAALCCGKPEFLRGCIEMVETQTGLLEAVGRGEDVPMSKLGTQTEVSLGNPPQVRRKGGGGASSSVLGTGKSTRRTIKCGICGTLGHNSQSCHLQGEALLQSQSNYIESFNYGDEDIDEDKDGCNVFMV* 1210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g5597 1209 Pfam Conserved region of Rad21 / Rec8 like protein 563 606 IPR006909 -
Mal2g5597 1209 MobiDBLite consensus disorder prediction 173 187 - -
Mal2g5597 1209 MobiDBLite consensus disorder prediction 220 260 - -
Mal2g5597 1209 MobiDBLite consensus disorder prediction 272 292 - -
Mal2g5597 1209 Pfam N terminus of Rad21 / Rec8 like protein 1 100 IPR006910 GO:0005515
Mal2g5597 1209 Gene3D Structural maintenance of chromosome 1. Chain E 526 616 IPR023093 -
Mal2g5597 1209 SUPERFAMILY "Winged helix" DNA-binding domain 542 606 IPR036390 -
Mal2g5597 1209 PANTHER SISTER CHROMATID COHESION 1 PROTEIN 3 1 607 - -
Mal2g5597 1209 Pfam FAR1 DNA-binding domain 777 831 IPR004330 -
Mal2g5597 1209 MobiDBLite consensus disorder prediction 1123 1149 - -
Mal2g5597 1209 ProSiteProfiles Zinc finger SWIM-type profile. 981 1029 IPR007527 GO:0008270
Mal2g5597 1209 MobiDBLite consensus disorder prediction 173 199 - -
Mal2g5597 1209 PANTHER SCC1 / RAD21 FAMILY MEMBER 1 607 IPR039781 GO:0007062|GO:0008278
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g5597 Mal-Chr2 134907956 134917947 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mal2g5597 Rad21_Rec8_N 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g5597 K06670 - zju:107409741 353.214