Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g5596 ATGGATGAACACGGTGAAGGTCCACCAACAAACGATCTATGTTCAATCTGTCACGGAAATTTCCAACTCCCATGTCAAGCAAATTGTTCACACTGGTTTTGTGCAAACTGTATAATCCAAGTTTCTCGTTACTCTTCCGCTCTTCAACCTTGCAAATGTCCTCTCTGTCGTCGTCCTATTAACCTTCTTGTTCCTTCTGTCGATGCCGCCGCGATTTCTACCGAGGAGGATCGTTTGATTCTTGTTGATGTTCAAAGATATAATCGTGTTTTTGGTGAACAATCTAATGCTAGTATTACTCAGAGATTACTTGATCTTCCGTTTCTTTTGAGGAGGCTTTTTAGGGATTTTGTTAACCCTAATACTTCTCTTCCTCTTGTTATTAGAGCTCGTGTCTTCATTACTATGTTACTGAGTGTTATATACATCTTCAGCCCTATTGACATCATTCCAGAAGGGGTATTGGGAATAGTTGGTCTCTTGGATGATGTCCTAATTGCACTAATCTTTTTCCTACATGTTGCTGCACTCTATAGATCAGTACTTTACCTCCGACATGGGGGTTCGTGA 570 0.407 MDEHGEGPPTNDLCSICHGNFQLPCQANCSHWFCANCIIQVSRYSSALQPCKCPLCRRPINLLVPSVDAAAISTEEDRLILVDVQRYNRVFGEQSNASITQRLLDLPFLLRRLFRDFVNPNTSLPLVIRARVFITMLLSVIYIFSPIDIIPEGVLGIVGLLDDVLIALIFFLHVAALYRSVLYLRHGGS* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g5596 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 98 IPR013083 -
Mal2g5596 189 SUPERFAMILY RING/U-box 11 64 - -
Mal2g5596 189 Pfam Zinc finger, C3HC4 type (RING finger) 11 61 - -
Mal2g5596 189 PANTHER BNAC07G13660D PROTEIN 9 189 - -
Mal2g5596 189 Pfam Protein of unknown function (DUF1232) 135 168 IPR010652 -
Mal2g5596 189 SMART ring_2 14 56 IPR001841 -
Mal2g5596 189 ProSiteProfiles Zinc finger RING-type profile. 14 57 IPR001841 -
Mal2g5596 189 ProSitePatterns Zinc finger RING-type signature. 29 38 IPR017907 -
Mal2g5596 189 PANTHER UNCHARACTERIZED 9 189 IPR038896 GO:0061630
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g5596 41 189 C3H Transcription Factor Family AT1G72175 64.667 1.99e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g5596 K15707 - csin:114301598 253.062