Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g5590 ATGACGAACTCCATCGATGATGCATTAGCGTTAGTCACGGCAGTAAGAGATAAGTTTCAAGATAAGAATAGGGAAAATTACCATTCATTTTTACAAGTTCTCAGTGATTTCAAGGCTGAAAGAATTGATAGAAGAGTTGTCAAATTAAAAGTGTATGAGTTGTTTAAAGGCCATCAAGATTTAATGTTGAGATTCAACACATTCATGCCAACTCAATATGAAATCAAACTTCCATTGGATGATGATGAACAACAAGGTCGTCAATTAGAGACAAAAGATGCATTAGCATTTCTTAAGAAAGTAAGAGATGTGTTTCAAGGTACGAATAGGGAAAAGTATGATGAGCTTTTAAAAATTCTCAAGGATTTCAATGCTCAAAGAATTGATGCAAGTGGTGTCGCAGAAAGAGTGACGGAGCTGTTTCAAGGGCATACAAATTTAATTTTGGGATTCAATGTCTTCTTGCCAAAGAAATATCAAATTACACCTAAACTTCAGCTCGACACTGGTTAG 513 0.3509 MTNSIDDALALVTAVRDKFQDKNRENYHSFLQVLSDFKAERIDRRVVKLKVYELFKGHQDLMLRFNTFMPTQYEIKLPLDDDEQQGRQLETKDALAFLKKVRDVFQGTNREKYDELLKILKDFNAQRIDASGVAERVTELFQGHTNLILGFNVFLPKKYQITPKLQLDTG* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g5590 170 PANTHER SIN3B-RELATED 3 131 IPR039774 GO:0003714
Mal2g5590 170 PANTHER SIN3B-RELATED 109 163 IPR039774 GO:0003714
Mal2g5590 170 ProSiteProfiles PAH domain profile. 1 72 IPR003822 GO:0006355
Mal2g5590 170 SUPERFAMILY PAH2 domain 85 157 IPR036600 GO:0006355
Mal2g5590 170 SUPERFAMILY PAH2 domain 4 73 IPR036600 GO:0006355
Mal2g5590 170 Pfam Paired amphipathic helix repeat 25 68 IPR003822 GO:0006355
Mal2g5590 170 Pfam Paired amphipathic helix repeat 111 155 IPR003822 GO:0006355
Mal2g5590 170 PANTHER PROTEIN, PUTATIVE-RELATED 3 131 - -
Mal2g5590 170 PANTHER PROTEIN, PUTATIVE-RELATED 109 163 - -
Mal2g5590 170 Gene3D Paired amphipathic helix 93 156 IPR036600 GO:0006355
Mal2g5590 170 Gene3D Paired amphipathic helix 7 70 IPR036600 GO:0006355
Mal2g5590 170 ProSiteProfiles PAH domain profile. 87 158 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g5590 Mal-Chr2 134745975 134746487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g5590 7 82 WRKY Transcription Factor Family AT4G12020 44.737 4.10e-15 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal2g5590 PAH 8.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g5590 K11644 - mtr:MTR_3g006125 221.861