Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g5493 ATGGCTCGCAAGTTTATAGCGATTTCGGCGGTTTCTACGGTGTTAAGTTTTGTAGGTCTTCAGTTTTGCACAGATTTGTCATTAGAGAAACTTAAATCAGATGGACTAATTGGCTGGAATTCAATTCACTTGGACAATGTCGACCATGACATTGAGTTACCTTTGGGTTTGTATACCACCATAGGGTTACTGACGAATTGCATGATCAATGTATTTGTCCTTCTTAATCTTTGTCTCAAGGCTATGTTTTTCTCAGAGTTGTACCCTTCTGAAAATCGTAAACTGATTGAACGTCTCGTTAATTATGTCATTTACAAGGGGACATTTCTTCCACTGATTGTGCCACCAACACTTTATCAAGCAGGTCTTTGGTCAACTTGGTTGGCCGTACTTTGTTCTTTAAAGATGTTTCAAGCTCTGGCTAGAGATCGATTGGAGCGGCTGAATGCATCTCCATCTGCCACACCCTGGACATATCTTCGTGTATATTCAGCATTGCTGTTCATTTTCTTGGTTGATGTTCTCTGGATAAGACTCTGTCTTGAAATATATAGCACACATGGGTCCTCTATGTTCCTGTTACTATTCTTTGAGCCTTTAAGTATTGCTTTTGAGACACTACAGGCCATTTTGGTACATGGATTTCAGTTACTTGACATATGGATTCATCATTCGGCTTGCAGTGGCAGTGATTTCCGAACACCTAAACTGCTTGACACATTAACCGCAGGTTCTTTATTGGAATGGAAGGGAATTCTTATCCGGAACTTGGGATTTTTCCTAGATATGGCCACATTTTTTATGGCACTTGGTCATTACTTGTATATATGGCGGCTTCATGGCATGGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAATATACGTGCATTACTTAGTGCAATGATAAACCGCATAAAAGGCTTTATTAGACTAAGATTAGCTCTAGGAGCACTTCATGCAGCTCTTCCCGATGCAACCACTGAAGAGCTAAGAGGATATGATGATGAATGCGCTATTTGTAGAGAACCTATGGCTAAGGCTAAAAAGCTAAACTGCAATCACCTCTTCCATCTTGCGTGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGTCCAACATGCCGAAAGCCACTTTTTGCAGGCCGGCCTGAAAATGAAACAGACTCTAGTACAGGGGTAATATCTAGCGATGAGCAACTTGCACGCCAAATGAGTGCAGGATTTGATCGTCAAAACTCGGCTAGACATAACATGCCGGCAGGATTGTTTCCAAATCAAACACTCAACAATGCCGAAGGTGTTCCTTGGAGGGGTGCAGGACTGGACTCAGGTTGGTTGCATTCTTGGCCAAATCAGGGAGTTGATGCAGCCGGTCCATCTACTGCTATCAGAACAGTAGGTCTCGGAAGAGTTCAAATGATGATGAGACATCTTGCATCTGTCGGAGAAACCTATGCTCAGACAACCTTTGATGATGCTTCTTGGAACCTTTGGCCTATTAATCCTTCTCAGGCTTCCACGAGTGGTCCAAGTCAGACGACCATTCCTTCCCCTGGTGTACGATTGCCAGCAGGAAATGGTGGTTTACATATAAGGACCGCTTCGCGATCTGCAAATGATAATGTAGCCAATGTACTTGCTATGGCTGAGACTGTTCGGGAAGTTCTACCTCATATTCCAGATGACATAATATTCCAGGACTTGCAGCGGACAAATTCTGTCACAGTTACTGTGAATAATCTTCTCCAGATGTGA 1770 0.4271 MARKFIAISAVSTVLSFVGLQFCTDLSLEKLKSDGLIGWNSIHLDNVDHDIELPLGLYTTIGLLTNCMINVFVLLNLCLKAMFFSELYPSENRKLIERLVNYVIYKGTFLPLIVPPTLYQAGLWSTWLAVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFIFLVDVLWIRLCLEIYSTHGSSMFLLLFFEPLSIAFETLQAILVHGFQLLDIWIHHSACSGSDFRTPKLLDTLTAGSLLEWKGILIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAMINRIKGFIRLRLALGALHAALPDATTEELRGYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFAGRPENETDSSTGVISSDEQLARQMSAGFDRQNSARHNMPAGLFPNQTLNNAEGVPWRGAGLDSGWLHSWPNQGVDAAGPSTAIRTVGLGRVQMMMRHLASVGETYAQTTFDDASWNLWPINPSQASTSGPSQTTIPSPGVRLPAGNGGLHIRTASRSANDNVANVLAMAETVREVLPHIPDDIIFQDLQRTNSVTVTVNNLLQM* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g5493 589 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Mal2g5493 589 Pfam Ring finger domain 336 380 IPR001841 -
Mal2g5493 589 ProSiteProfiles CUE domain profile. 549 589 IPR003892 GO:0043130
Mal2g5493 589 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 589 - -
Mal2g5493 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 387 IPR013083 -
Mal2g5493 589 Pfam CUE domain 553 589 IPR003892 GO:0043130
Mal2g5493 589 SUPERFAMILY RING/U-box 325 386 - -
Mal2g5493 589 SMART ring_2 338 379 IPR001841 -
Mal2g5493 589 CDD CUE_RIN3_plant 550 587 IPR035667 -
Mal2g5493 589 Gene3D - 548 588 - -
Mal2g5493 589 CDD RING-H2_synoviolin 335 380 - -
Mal2g5493 589 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g5493 Mal-Chr2 132729567 132734622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g5493 57 397 C3H Transcription Factor Family AT3G16090 28.065 6.84e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g5493 K10636 - gmx:100820578 1040.02