Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g5447 ATGGAGAATAGTGGTAAAGTATGTCTCATTTGTTACAAGTCATTTCCCAATGGCAAAGCTTTGGGAGGACATATGAAATCTCACTTTGCCAGATTGCCGATCCCTTCAAAACCCCCAATCAACGACCAAGTACCTGAATACTCAATTGAGTCAGCCAAACATCCAACTCACTCTGTCTCTACATCTTCCCCATCACTTGTTAATCCAAGTAATAACCCTACACACAATCTTCGATCTTTGAAAGGGAACTTCTCTTGTACCCTGTTAAAATATGGTAAGAGTAATGTGTTTGAGTCTTATCCAAAAAACCCAACTGGAAAAAGATCGAAACGTAGACCTAGACAATTTAATATGGGTGAAAAAGAAGAAGAGAGTAGACAATTTAATATGTCTGAAGAAAAAGAAGAGAATACACAATTTAATTTAGTGTATAGTGATTTGGATATAGAAGCTGGTGAAACACTGGGTTTTATTCAACAGAAAGAATGGAAACAAGTTGAAGATAAATACTATGGTGAGAAGAAAAAAGTAGGTGAAGATGGAAACAACGTGTTTGAGTGTGATATTTGTCATGAAGTGTTTCAATCTTGTAAAGATCTTTTTGGACATGAAGCGATCCATAAGAAAACTAACAATCTATCGGAAGAAATTGGTAGAAGTGGAAATATATATGATATTATAAATGAAGAAGTGCATAAGTGTGCATATTGCTTTGAAATATTTGAATCCGATCAGGGATTGGAGGAACATATGAAGGAACACCTATACAATTATTATGATTCTGACCCATAG 792 0.351 MENSGKVCLICYKSFPNGKALGGHMKSHFARLPIPSKPPINDQVPEYSIESAKHPTHSVSTSSPSLVNPSNNPTHNLRSLKGNFSCTLLKYGKSNVFESYPKNPTGKRSKRRPRQFNMGEKEEESRQFNMSEEKEENTQFNLVYSDLDIEAGETLGFIQQKEWKQVEDKYYGEKKKVGEDGNNVFECDICHEVFQSCKDLFGHEAIHKKTNNLSEEIGRSGNIYDIINEEVHKCAYCFEIFESDQGLEEHMKEHLYNYYDSDP* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g5447 263 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Mal2g5447 263 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 262 - -
Mal2g5447 263 MobiDBLite consensus disorder prediction 53 72 - -
Mal2g5447 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Mal2g5447 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 254 IPR013087 -
Mal2g5447 263 ProSitePatterns Zinc finger C2H2 type domain signature. 234 254 IPR013087 -
Mal2g5447 263 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 262 IPR044303 GO:0006355
Mal2g5447 263 Pfam C2H2-type zinc finger 231 254 - -
Mal2g5447 263 Pfam C2H2-type zinc finger 184 209 - -
Mal2g5447 263 Pfam C2H2-type zinc finger 8 28 - -
Mal2g5447 263 ProSitePatterns Zinc finger C2H2 type domain signature. 187 207 IPR013087 -
Mal2g5447 263 MobiDBLite consensus disorder prediction 113 133 - -
Mal2g5447 263 MobiDBLite consensus disorder prediction 99 135 - -
Mal2g5447 263 SMART c2h2final6 6 28 IPR013087 -
Mal2g5447 263 SMART c2h2final6 232 254 IPR013087 -
Mal2g5447 263 SMART c2h2final6 185 207 IPR013087 -
Mal2g5447 263 SUPERFAMILY beta-beta-alpha zinc fingers 7 207 IPR036236 -
Mal2g5447 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 185 212 IPR013087 -
Mal2g5447 263 MobiDBLite consensus disorder prediction 52 72 - -
Mal2g5447 263 Gene3D Classic Zinc Finger 178 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g5447 Mal-Chr2 131291220 131292011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g5447 8 254 C2H2 Transcription Factor Family AT1G02030 26.744 4.56e-17 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal2g5447 zf-C2H2_6 1.2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g5447 - - mtr:MTR_3g008310 391.349