Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g5389 ATGAAAGGTAATTGTGTACTTTATCACTGTGAATTTGAGCTGAGTTTAGTTCAGTTCAGTTTAGATTTAGAAATAAAAATGACAAGTAATAAGCAGAATCAAAATCAAAATCAAAATGAGTGTGAGAGTGAAACAAAATCAAAATCAAACACAAACCCTTATCCTCCTCCAACCGCACCCTACTCTGATCTTGTTCGTGATGCTAATCTCTTCCAACAAAAGCTTCAATCTTTTCACGATTCCCTTGGTTCCAAATTAAAGATTCCTACTATAGGAGGGAAGCCACTAGATCTGCATCACCTTTTCATTGAAGTAACATCACGTGGTGGTATTGAAAAGGTAATTGTAGATCGTAAATGGAAGGAAGTAATAATGAGCTTCAACTTCCGAGATACCATAACAAGCGCATCATTCATGGTGCGCAAGTCCTATCAATCGTTGCTATATCACTTTGAGCAAGCGTATTATTTTCGCAAGCAAGTCCCTCCTTCAACACCTGATGCTTTGAGGGGGAACGTTGCCAATAGCTTCACAACCAATAGGGACGGTGCTGCTATCAATGATTCAGCTGTTCAGGTTAGTCCAGCACAGACACTCGGTTATTCAGTGCGTGGAACAATTGACGGGAAATTTGATGACGGATATATAGTTACAGTGGACCTGGGTTCTGAACAGCTGAAAGGTGTCCTGTATCATGTTCCAAGTAATGCATCTAAGGGTTCTTCTATTGAAGGCAAGAGAGAGCAATTAGTAGGAAAATTGGGTTTATGCGGAGGAATCTGA 783 0.3997 MKGNCVLYHCEFELSLVQFSLDLEIKMTSNKQNQNQNQNECESETKSKSNTNPYPPPTAPYSDLVRDANLFQQKLQSFHDSLGSKLKIPTIGGKPLDLHHLFIEVTSRGGIEKVIVDRKWKEVIMSFNFRDTITSASFMVRKSYQSLLYHFEQAYYFRKQVPPSTPDALRGNVANSFTTNRDGAAINDSAVQVSPAQTLGYSVRGTIDGKFDDGYIVTVDLGSEQLKGVLYHVPSNASKGSSIEGKREQLVGKLGLCGGI* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g5389 260 MobiDBLite consensus disorder prediction 30 52 - -
Mal2g5389 260 SUPERFAMILY ARID-like 65 164 IPR036431 GO:0003677
Mal2g5389 260 SMART bright_3 66 157 IPR001606 GO:0003677
Mal2g5389 260 CDD ARID_HMGB9-like 67 152 IPR045303 GO:0003677
Mal2g5389 260 Pfam ARID/BRIGHT DNA binding domain 70 152 IPR001606 GO:0003677
Mal2g5389 260 Gene3D - 61 170 IPR036431 GO:0003677
Mal2g5389 260 MobiDBLite consensus disorder prediction 30 59 - -
Mal2g5389 260 ProSiteProfiles ARID domain profile. 65 156 IPR001606 GO:0003677
Mal2g5389 260 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 36 243 - -
Mal2g5389 260 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 36 243 - -
Mal2g5389 260 SMART ARID_2 62 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g5389 Mal-Chr2 129822702 129827249 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g5389 59 239 ARID Transcription Factor Family AT3G13350 51.913 6.90e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mal2g5389 ARID 4.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g5389 - - mtr:MTR_3g009890 372.089