LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal2g5324	ATGGAAGAAGGGTTAGGTCAACACTCAGTTCCTCCTCCGGGTTCCATTGACAAGTATAAGATTCTGGATATTAAGCCTATAAGAAGTTTGATACCTGTTTTTTCAAAGAATCCTCAAGGTCAATCTTCAGGTCAGTATCCTTCTGGGTTTTCTCCATTTTTCCCATTCGGTGGACCTCATGAGACTTCAACCACTGGGGTAAAGCCAAGGGGTAGAGCGATGCCGACTCCACTTCAAGCATTTAGGAGCCCTTTTGGAGAGGATGATGATGATGATGGTTTTAGTAACAAAAGAAATGCAGCATCACGTTCAAGCCGGGTCAAATTGAAGAAGCAGAAGGTATATAATGATTTTCATGTTGACTTGAGTGCTTTAGTTGGTATAAGCCCGGGACAAAGAGACAACGGTAACCGTGAAGTTGTTAATATTGTGCTCATGTCATTTGATGCACTAAGAAGAAGGCTATCTCAACTTGTAGATGCCAAGGAATTGAACACGGGTTTGATCAAGCGTACGGATTTAAAAGCTGGCAATGTTTGTATGACCAAAGGAATTCGAACAAACACAGCGAAGAGGGTAGGATCGGTACCTGGAGTTGAGATTGGGGACATTTTCTTTTTCCGAATGGAAATGTGTGTTATCGGTTTGCATGCTCAATCCATGGGGGGGATTGATGCCTTGCATATCCAGAGTGACCGTGGGGAAGAGACTTTGGCTGTTAGCATTGTTTCGTCAGGAGAATATGACGATGAAGCTGACGATGGTGATGTTATAATTTATACCGGTCAGGGTGGGAATTTCAACAAGAAAGATAAGCATGTGTCAGATCAGAAGCTTCATAAGGGTAATCTTGCTTTGGATAGAAGTTCACGAACACACAATGAAGTAAGAGTCATCCGAGGCATCAAAGATGCTGTGAATCCAGGCGCAAAAATCTACGTCTATGATGGTCTGTATAAAATTCAAGATTCATGGGTTGAAAAAGCAAAAGGAGGCGGTGGCTTGTTTAAGTATAAGTTGATAAGAGTGCCTGGACAACCTAGTGCCTTTGCCGTTTGGAAATCTGTTCAGAAGTGGAAATCTGGCTTCCCTGCAAGGACTGGGCTTATTCTTGCTGACCTCTCCTCGGGAGCCGAGAGTCTTCCTGTATCACTTGTCAATGAAGTCGATAACGTGAAGTCACCTGCCTTTTTCACATATTTCCACTCTCTTAGACATCCGAAATCATTCAGTTTAATGCAGCCTTCACATGGTTGCAGCTGTAGTAGCAAAAAAGCATGTGTCCCTGGCGATTTGGACTGCTCTTGCATTCGGAGAAACGAAGGTGATTTTCCTTATATTATTAATGGAGTTCTGGTGAGTCGGAAGCCGTTGGTTCATGAATGTGGCCCCACATGTCAGTGTTTTCCTAACTGCAAAAATCGAGTATCCCAAACCGGTTTGAAGCACCAAATGGAAGTGTTCAAAACAAAGGATAAAGGTTGGGGTCTTCGATCATGGGATCCTATTCGTGCTGGTGCTTTTATTTGCGAGTATGCAGGAGAAGTTATTGATAAAGCTAGGTTAAGTCAGCTTGTACAAGAAGGTGATACTGATGAGTATGTTTTCGATACAACCCGTATTTATGAATCTTTCAAGTGGAATTATGAACCTAAGTTACTAGAAGAAGTGAGCACCAATGAGTCTAGTGAGGATTATGCTTTGCCACATCCTCTTATTATAAATGCTAAGAATGTTGGAAATGTGGCTAGATTCATGAATCATAGTTGCTCTCCCAATGTTTTCTGGCAGCCTGTCTTATATGAAGAGAACAACCAATCCTTTCTCCATGTTGCATTTTTTGCATTGAGACATATTCCACCAATGCACGAGTTAACATATGATTATGGTTCTGACCGATCCGATCACACCGAGGGTAGCAGTGCACGCAAAGGTAGAAAGAAATGCTTATGTGGATCATCAAAATGCCGTGGTTCTTTTACTTGA	1986	0.4225	MEEGLGQHSVPPPGSIDKYKILDIKPIRSLIPVFSKNPQGQSSGQYPSGFSPFFPFGGPHETSTTGVKPRGRAMPTPLQAFRSPFGEDDDDDGFSNKRNAASRSSRVKLKKQKVYNDFHVDLSALVGISPGQRDNGNREVVNIVLMSFDALRRRLSQLVDAKELNTGLIKRTDLKAGNVCMTKGIRTNTAKRVGSVPGVEIGDIFFFRMEMCVIGLHAQSMGGIDALHIQSDRGEETLAVSIVSSGEYDDEADDGDVIIYTGQGGNFNKKDKHVSDQKLHKGNLALDRSSRTHNEVRVIRGIKDAVNPGAKIYVYDGLYKIQDSWVEKAKGGGGLFKYKLIRVPGQPSAFAVWKSVQKWKSGFPARTGLILADLSSGAESLPVSLVNEVDNVKSPAFFTYFHSLRHPKSFSLMQPSHGCSCSSKKACVPGDLDCSCIRRNEGDFPYIINGVLVSRKPLVHECGPTCQCFPNCKNRVSQTGLKHQMEVFKTKDKGWGLRSWDPIRAGAFICEYAGEVIDKARLSQLVQEGDTDEYVFDTTRIYESFKWNYEPKLLEEVSTNESSEDYALPHPLIINAKNVGNVARFMNHSCSPNVFWQPVLYEENNQSFLHVAFFALRHIPPMHELTYDYGSDRSDHTEGSSARKGRKKCLCGSSKCRGSFT*	662

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mal2g5324	661	ProSiteProfiles	Post-SET domain profile.	645	661	IPR003616	-
Mal2g5324	661	Pfam	Pre-SET motif	375	475	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968
Mal2g5324	661	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1	14	660	-	-
Mal2g5324	661	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	661	IPR025794	GO:0016571
Mal2g5324	661	Gene3D	-	176	361	IPR036987	-
Mal2g5324	661	SUPERFAMILY	SET domain	381	658	IPR046341	-
Mal2g5324	661	MobiDBLite	consensus disorder prediction	628	661	-	-
Mal2g5324	661	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR	14	660	-	-
Mal2g5324	661	Pfam	SET domain	494	630	IPR001214	GO:0005515
Mal2g5324	661	SMART	preset_2	371	467	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal2g5324	Mal-Chr2	126928786	126930771	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal2g5324	6	660	Su(var)3-9 homologs	AT1G73100	51.994	0.0	695

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Mal2g5324		SAD_SRA	5.5e-48	CL0178

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal2g5324	K24405		-	gmx:100812173	1015.37

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal2g5324	2	126928786	126930771	Mal5g1911	5	40781131	40783248	PCT

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