Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g5322 ATGTCAAGCAAGAAGAAACAAAAACGCAAATCCACCGATAGCGATGAAGACGACGACGTTTTCTTCTACCGTTTCTGCGCTTCATCATCAACCACCACCACCAACAATAACCAAATCCAATCCTCAAAACCAAACAACAACAACAAAGCACCATCATCAACTATAACAGCAACAGGAGAATCATTAGCACCATCAAAATCAACCTTATACGTTTCAAATCTAGATTACTCCTTAACTAACTCCGATCTCCACACTCTGTTCTCCACCTTCGGCCGAATCGCGCGTGTGACTGTTTTAAAAGACCGTCACACGCGCTTAAGCCGAGGTGTAGCATTTATTCAATTTGTTTCTCGTCACGACGCGCAACGCGCTGTGACGGAGATGAATAAGAAGATTTTGAATGGACGGACTTTGAGTGCTTCTATTGCTGCTGATAATGGACGTGCTCCTGAGTTTATTAGGAAGAGGGTTTATAATACTGAGACTGGTTTGTGTTTTGAGTGTGGGGGGAGTGGGCATTTGTCGTACGAGTGTCCGAAGAATCAGTTGGGGCCGAGGGCGAGGCCGCAGCCGAAGAAGCCGAGGAGGGGGTTTGGTGGAGCCAAAGATAGAGAGGTGGGGGATGAGGAGGAGGAAGAGGATGACAGTGGGAGGATTGAGAGGTTTGAGGAAGATAATTGGGCTTCTGTGGTGGATGATGGAGCTGATGAGAGATTGTTAGGGAGGAGTGGGAAGGATGATGATGAGGGTTTGGATGATAAGAAGAGGAAGAAGAAGAAGAAAGGGAAGAAATCTGGGTATTTTAGTGATGAGAGTGATCATGATGACGATGATTGA 837 0.4612 MSSKKKQKRKSTDSDEDDDVFFYRFCASSSTTTTNNNQIQSSKPNNNNKAPSSTITATGESLAPSKSTLYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFIQFVSRHDAQRAVTEMNKKILNGRTLSASIAADNGRAPEFIRKRVYNTETGLCFECGGSGHLSYECPKNQLGPRARPQPKKPRRGFGGAKDREVGDEEEEEDDSGRIERFEEDNWASVVDDGADERLLGRSGKDDDEGLDDKKRKKKKKGKKSGYFSDESDHDDDD* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g5322 278 MobiDBLite consensus disorder prediction 220 255 - -
Mal2g5322 278 SMART rrm1_1 68 141 IPR000504 GO:0003723
Mal2g5322 278 SMART c2hcfinal6 164 180 IPR001878 GO:0003676|GO:0008270
Mal2g5322 278 SMART rrm2_1 68 141 IPR003954 GO:0003676
Mal2g5322 278 Gene3D - 1 151 IPR012677 -
Mal2g5322 278 MobiDBLite consensus disorder prediction 31 59 - -
Mal2g5322 278 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 13 276 - -
Mal2g5322 278 SUPERFAMILY Retrovirus zinc finger-like domains 155 181 IPR036875 GO:0003676|GO:0008270
Mal2g5322 278 MobiDBLite consensus disorder prediction 180 278 - -
Mal2g5322 278 SUPERFAMILY RNA-binding domain, RBD 63 151 IPR035979 GO:0003676
Mal2g5322 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 138 IPR000504 GO:0003723
Mal2g5322 278 CDD RRM_ZCRB1 66 143 IPR034219 -
Mal2g5322 278 Pfam Zinc knuckle 164 180 IPR001878 GO:0003676|GO:0008270
Mal2g5322 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Mal2g5322 278 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 13 276 IPR044598 GO:0000398|GO:0005689
Mal2g5322 278 ProSiteProfiles Zinc finger CCHC-type profile. 165 180 IPR001878 GO:0003676|GO:0008270
Mal2g5322 278 Gene3D - 155 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g5322 Mal-Chr2 126874833 126875669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g5322 67 143 Eukaryotic Initiation Factors Gene Family AT4G34110 32.468 6.92e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g5322 K13154 - gmx:100814914 302.753