Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g5262 ATGTCCACAGCTGAGCCACCATCTCCCACCACCACCGGCGTAGGTCTCGGCTACGGCATCGCAATAGCCGTAAGCATCCTCGTCCTCATCTCCACCATTATGCTAGCTTCCTACCTCTGCGTCCGTATAAAATCTCACGGACGCAGAGACTCCTTCCATCTTGACATCCACCATCAGGCTCATACTATTAACACCTCGGCTCAGCCCGGCCCATTTATCTTGGGCCTAGAAAAGCCCATGATTGAAACCTACCCAAAGATGATACTTGGAGAGAGTAGAAGATTGCCCAAGCCCAATGAAGGCCCGTGTGCTATTTGCTTGACTGATTATCTTCCAAAGGAAACCATAAGGTGTGTTCCGGATTGTCAACATTGTTTTCATGCAGAGTGTGTTGATGAGTGGCTGAAGATGAGTGCCACGTGTCCTTTGTGTCGAAACTCTCCGGCTCCGTCGCCGGTGGCTACACCGTTGTCGGAGCTTGTTCCTCTGGCTTTTCATGCTAGATGGTTGTGA 513 0.5088 MSTAEPPSPTTTGVGLGYGIAIAVSILVLISTIMLASYLCVRIKSHGRRDSFHLDIHHQAHTINTSAQPGPFILGLEKPMIETYPKMILGESRRLPKPNEGPCAICLTDYLPKETIRCVPDCQHCFHAECVDEWLKMSATCPLCRNSPAPSPVATPLSELVPLAFHARWL* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g5262 170 CDD RING-H2_EL5_like 103 145 - -
Mal2g5262 170 SUPERFAMILY RING/U-box 97 150 - -
Mal2g5262 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 150 IPR013083 -
Mal2g5262 170 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 17 151 - -
Mal2g5262 170 Pfam Ring finger domain 103 145 IPR001841 -
Mal2g5262 170 SMART ring_2 103 144 IPR001841 -
Mal2g5262 170 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 151 - -
Mal2g5262 170 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g5262 Mal-Chr2 125472908 125474235 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g5262 5 168 C3H Transcription Factor Family AT5G07040 61.677 1.53e-71 211