Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g5217 ATGAAGAAAACTTTTCACACCGCCACCCGGCACGACTCTTATCTCCGCCGTCAACCACCGTGGCCAGTCGACCATCACCGGAACTCCAGATTCCACTCCAACCACTTCCATCATCGCCCCCGCCTTCCCAATTTCATCGTCAACCTCCGCCTCACCCACCGCCGTAACCTCCGCCGTGAAGAAATTGAATCCTTAATCGCCGAATGCAAACCAAATCCTGAAAATTTCTCATTCTCCCCAAACGAAAGCATCGCTGCTTCTCTCAATTTCAATAATCGATCAGACGCGATCAACGCTGTCGTTTGGTTCTGGGAATCACGTCTCTCAGTTTCAAAATGCCGTCACGATTTCACGCCGGAGTTCATCAGCAATGTCGAAAACGGAGACGAACTCGATGTTCGTCTCCGAAGCGTATTCACGAGCCACGTGAAGGAATTAATGGAAGGAAATGAAGTAAACCTTTGGATAAAAGAATGGGATCGTTTAACAAAAGAGATTAATCTAGTTAATAGCTTATTAAGTAAACCTTTACATATTAGGGTTCAAGATGAGAATATTGATAGAAAAAAAGTGCTTGAAGGTGAAAAGAATTTAGTTGAGAAGAGATTAAAGGAGTTTGAATGTGCTATGGAGTGTATTTTGATGTATTTAGAAGAGAAGAATAATAATTCTGATGAAAATGGTGATGTTGATTATGATGTTAATGTTAATGTGATTAGGTTTGGTGAAACATATGATTGGGAGAAGATATGTAATTTTATTGTTAGGGAAAGGAGGAGACTTGAAGAAGGTTTGCCTATTTATGCTTATAGGAGGGAGATTCTTCAACAAATACATCATCAACAGATAACAGTGTTGATTGGAGAGACAGGTTCTGGGAAGAGCACTCAGATAGTGCAGTTTCTTGCTGATTCAGGCATTGGAGCCAATGAGTCAATTGTGTGCACCCAGCCTCGAAAGATTGCTGCGAAATCGTTAGCTGAAAGGGTCCGGGACGAAAGTGACGGATGTTATGAAGACAATTCAATCAAGTGTTATTCTTCGTTTTCATCTTGGAACAAGTTCGATTCCAGGATAACCTTCATGACAGATCATTGTTTATTGCAACACTACATGAGTGATAAGAATTTGTCTGGGATCTCGTGTATTATAGTGGATGAGGCTCATGAAAGGAGTATAAATACTGATTTACTGTTGGCGTTGATAAAGAATTTACTTTGTAAGAGGGTTGAAATGCGGCTTATCATCATGTCTGCCACGGCTGATGCAAAGCAGCTATCTGATTACTTCTATGGTTGTGGAATTTTTCGTGTGCCGGGGAGGAACTTCCCTGTAGAGATGAGATATGTTCCTTCTGATTATGGAGGACGTTCTGGTTCTTCTGTTGTGGACTCGTACGTTTTCGATGTTGTGAAAATGGCAACTGAAATTCATAGAACAGAGAAAGAGAAAGAAGGAACTATTCTTGCTTTTCTTACCTCACAGTTAGATGTAGAATGGGCCTGTGAAAAGTTTGAACACCCTTCTGCAGTTGCTTTGCCCTTGCATGGAAAACTTTCGTCTGAAGAGCAATTTCATGTTTTCCGGAACTATCCTGGGAAAAGAAAAGTGATATTTTCAACGAATGTCGCAGAGACATCACTTACAATTCCTGGTGTTAAGTATGTGATAGATTCTGGATTGGTTAAAGATAGTCGATTTGATCCTAACAGTGGGATGAATGTACTTAAGATTTGCTGGATCAGCCAGAGTTCTGCTAATCAACGGGCTGGTCGTGCTGGGAGAACCGAGCCTGGTAGGTGCTATAGACTGTACTCAGAAGCTGATTATCAATCTATGGAACTGAATCAAGATCCTGAGATTCGAAGAATTCATCTCGGCGTAGCAGTTTTGAAGATCCTTGCTTTAGGGGTGAAGAATGTTCAGGATTTCGATTTTGTGGATGCTCCATGCACTAGCTCTATTGAGAGGGCAATCAGGAATCTAATTCAATTAGGAGCCATTAAACTGAACAATGATGTTCATGAATTAACTTCTGAAGGTAGATGCTTAGCAAGAATGGAGATTGAACCTAGGCTTGGCAAACTCATTCTTGGCTGTTTCCAATATGCCTTGGGTAGGGAAGGCATTGTCCTTGCTGTCATGATGGCCAATGCTAGAAGCGTATTTTGCAGAGTTGGTAATGAAGGTGACAAACAAAGATCTGATTGCCACAAAGTTCAATTTTGCCATTGCGATGGTGACCTTTTTACTCTTCTCTCTGTGTACAAGGAATGGGAAGCCCTGCCTCAAGATTGGAAGAATAAATGGTGCTGGGAAAACAGCATCAATGCCAAATCTATGAGGAGATGCCAAAACACATTTTTGGAGTTGGAATCTTGCCTAGAGAATGAACTTGGCTTTGTTGTTCCAAGTTATTGGCGCTGGGACCCTCACACCCCTTCTATTCATGATAAGAATATGAAAATGGCTATACTTTCCTCACTTGCTGAAAATGTAGCCATGTACTCTGGACGCAATCAACTTGGTTATGAAGTAGCTCAAACTGGGAAATATGTTCAACTACATCCATCTTGTTCCTTGCTCGTATTTGCCCAGAGGCCTAGTTGGGTGGTTTTTTATGAGCTTCGTTCAGAGTCTAATGAATATTTGTTCTGCGTGAGTGCTGTTGACTTTCAATCATTTTACAGCCTTAAACCTCCTCCCTTGTTTGATGTATCCAAGTTGGAAGAGCAGAAGTTGCAAAGTAAGACACTGGTTGGTTTTGGCAAACATGTTCTCAAGAGATTTTGTGGGAAAGGAAATTTGCTCGGTCATGTTTCTCGTATTAGGAAAGCTTGTATGGATGAACGAATCTTTGTTGATGTGAATTTTGACGAGAACCACATTCAGTTGTATGCCAGTTCACATGATGTCAATACAGCTAGTAAGTTGGTGAATGATATTTTAGAATATGAGAAAAAGAGATTACGCACTGAATGTATGGAAAAATGTTTGTATCATGGGTTTGGTTCCTCATCACCCGTGGCTTTGTTTGGTTCTGGTGCTGAGATAAAACATTTGGAACTTGAGAAGCATCCCTTGAGTGTTGATGTGTTTCACCCAAACGTAAATGCAATTGACGAAATGGAGCTCCTGATGTTTTTGGAGAAGAATACCTCTGGTTGTATATGTGACATGCAAAAATTCACAGGCATGGTGAAAGATGCCAAGGATAAAGAAAAATGGGGCAGGATAACATTTCTGACCCCCAATGCTGCCAAAAGAGCTGCTGAGCTGGATGGAGAAGAGTTTTGTGGTTCGTCCTTGAAAATAGTTCATTCACAATCAGCTACGGGAGGGGATGCAACATTTTCATTTCCTGCTGTTGAAGCAAGAATTTCTTGGCTTCGTAGGCCTATCAAACCAGTTGGCATAATCAAATGTGATAAAAATGATGTGAATTTCATCTTGAGAGATTTTAATAACCTTGTAATAGATGAAAGGTATGTTAGTTGTGCTCCCAGTGATAGGTATATGGACAGCATTATTATAACTGGGCTTGACAAAGAGCTTCCTGAGACTGAAATTTTGGATGTACTAAGATCTGCTACTAGTAGACGGATTCTGGATTTTTTCTTTAAGAGGGGCGATGCTGTTGAAAATCCACCATGCAAGGCCATTGAAGAGGCACTATTAAAAGAAATCTCCCCCTTAATGCCCAAAAAAAACGCTCACATTAGTTCTTGCCGTGTTCAGGTGTTTCCACCTAAGCCGAAGGATTATTTGATGAGTGCTTTAATTCATTTTGATGGAAGATTACATTTAGAAGCAGCAAAAGCTTTGGAGAAAATTGATGGAAAGGTGTTGCCCGGATGTCTTTCATGGCAGAAGATAAAGGCCCAGCAATTGTTTCACAGCACCTTGATATTTTCTTCTCCAGTGTATCGTGTGATTAAGGGGCAACTGGAAAAAGTGCTGGCAAGTTTTAACAATTTAGAAGGTCTTGAGTGGATTCTAGACAGGACTCCTAATGGTTCCCACCGAGTGAAGATAACAGCCAATGCCACAAAGACGGTGGCAGAAGGTAGGAGACCTCTGGAAGAACTGTGGAAAGGGAAAACCATTGTCCACAACCTCACCCCTGCCGTTCTACAGCTCATGTTGTCCAAAGATGGTTCTACTCTTACAAGCTCAATACAGCAAGCGACATCAACTTACATTCAATTTGACAGGCGCAGCATCAAGTTACGGATATTTGGTTCGCCGGACAAGATTGCTTTGGCTGAGCAGAAGTTAATTCAATCTCTCATGTCCCTCCATGAAGAAAAACAGTTAGTAATCCGTTTGAGTGGGAGGGACCTACCTTCTGATTTAATGAAGCTAGTGGTTAAGAATTTCGGGCCAGATCTTCATGGACTAAAAGAGAAGGTACCTGGGGCAGATCTTAAGCTCAACACACGTGACAAGACAATCCTTCTTCATGGTAACAAGGAGTTGAAACCAAGAGTAGAGGAAATAACTTTTCAGATTGCGCGTTTAAGCCATGACTTAGTTGAGAGACTAGACACTGGACCTAGTTGCCCAATTTGCTTGTGTGAGGTTGAGGATGGATATCAGCTAGAAGGCTGTGGTCATTTGTTCTGCCGGTCGTGTATGGTGGATCAATGTGAATCTGCTATAAAAAATAAAGGCATTTTCCCAGTATGTTGTGCTCATCAGGGCTGTGGAGATCCTATTTTGCTTGCAGATTTCAGAACTCTCCTATCAAATGATAAGTTGGAGGAGCTTTTCAGGGCTTCTTTGGGAGCTTTTGTAGCATCAAGTTCAGGTACTTATAGGTTTTGCCCGTCTCCTGACTGCCCCTCAATCTATCGAGTTTCAGATGCCGACACAGCTAGTGTCCCATTTGTTTGTGGGGCATGTTATTCAGAGACTTGTACCCGGTGCCACATAGAGTATCATCCGTACGTTTCATGCGAGTTATATCAACAATTCAAGGATGACCCGGATTCATCTCTTAGGGATTGGTGCAAAGGGAAAGAACAAGTCAAGAAATGCCCGGCGTGTGGGCATGTAATTGAGAAGATAGATGGGTGCAATCACATTGAGTGCAAGTGTGGAAAACGTATCTGCTGGGTTTGCTTGGAGTTCTTTACAAGCAGTGGTGAATGTTATAGCCATTTGGAAAATATACACATGGGAATACATTAA 5193 0.4165 MKKTFHTATRHDSYLRRQPPWPVDHHRNSRFHSNHFHHRPRLPNFIVNLRLTHRRNLRREEIESLIAECKPNPENFSFSPNESIAASLNFNNRSDAINAVVWFWESRLSVSKCRHDFTPEFISNVENGDELDVRLRSVFTSHVKELMEGNEVNLWIKEWDRLTKEINLVNSLLSKPLHIRVQDENIDRKKVLEGEKNLVEKRLKEFECAMECILMYLEEKNNNSDENGDVDYDVNVNVIRFGETYDWEKICNFIVRERRRLEEGLPIYAYRREILQQIHHQQITVLIGETGSGKSTQIVQFLADSGIGANESIVCTQPRKIAAKSLAERVRDESDGCYEDNSIKCYSSFSSWNKFDSRITFMTDHCLLQHYMSDKNLSGISCIIVDEAHERSINTDLLLALIKNLLCKRVEMRLIIMSATADAKQLSDYFYGCGIFRVPGRNFPVEMRYVPSDYGGRSGSSVVDSYVFDVVKMATEIHRTEKEKEGTILAFLTSQLDVEWACEKFEHPSAVALPLHGKLSSEEQFHVFRNYPGKRKVIFSTNVAETSLTIPGVKYVIDSGLVKDSRFDPNSGMNVLKICWISQSSANQRAGRAGRTEPGRCYRLYSEADYQSMELNQDPEIRRIHLGVAVLKILALGVKNVQDFDFVDAPCTSSIERAIRNLIQLGAIKLNNDVHELTSEGRCLARMEIEPRLGKLILGCFQYALGREGIVLAVMMANARSVFCRVGNEGDKQRSDCHKVQFCHCDGDLFTLLSVYKEWEALPQDWKNKWCWENSINAKSMRRCQNTFLELESCLENELGFVVPSYWRWDPHTPSIHDKNMKMAILSSLAENVAMYSGRNQLGYEVAQTGKYVQLHPSCSLLVFAQRPSWVVFYELRSESNEYLFCVSAVDFQSFYSLKPPPLFDVSKLEEQKLQSKTLVGFGKHVLKRFCGKGNLLGHVSRIRKACMDERIFVDVNFDENHIQLYASSHDVNTASKLVNDILEYEKKRLRTECMEKCLYHGFGSSSPVALFGSGAEIKHLELEKHPLSVDVFHPNVNAIDEMELLMFLEKNTSGCICDMQKFTGMVKDAKDKEKWGRITFLTPNAAKRAAELDGEEFCGSSLKIVHSQSATGGDATFSFPAVEARISWLRRPIKPVGIIKCDKNDVNFILRDFNNLVIDERYVSCAPSDRYMDSIIITGLDKELPETEILDVLRSATSRRILDFFFKRGDAVENPPCKAIEEALLKEISPLMPKKNAHISSCRVQVFPPKPKDYLMSALIHFDGRLHLEAAKALEKIDGKVLPGCLSWQKIKAQQLFHSTLIFSSPVYRVIKGQLEKVLASFNNLEGLEWILDRTPNGSHRVKITANATKTVAEGRRPLEELWKGKTIVHNLTPAVLQLMLSKDGSTLTSSIQQATSTYIQFDRRSIKLRIFGSPDKIALAEQKLIQSLMSLHEEKQLVIRLSGRDLPSDLMKLVVKNFGPDLHGLKEKVPGADLKLNTRDKTILLHGNKELKPRVEEITFQIARLSHDLVERLDTGPSCPICLCEVEDGYQLEGCGHLFCRSCMVDQCESAIKNKGIFPVCCAHQGCGDPILLADFRTLLSNDKLEELFRASLGAFVASSSGTYRFCPSPDCPSIYRVSDADTASVPFVCGACYSETCTRCHIEYHPYVSCELYQQFKDDPDSSLRDWCKGKEQVKKCPACGHVIEKIDGCNHIECKCGKRICWVCLEFFTSSGECYSHLENIHMGIH* 1731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g5217 1730 PANTHER ATP-DEPENDENT RNA HELICASE 1551 1646 - -
Mal2g5217 1730 PANTHER ATP-DEPENDENT RNA HELICASE 85 1482 - -
Mal2g5217 1730 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1518 1597 IPR013083 -
Mal2g5217 1730 ProSitePatterns Zinc finger RING-type signature. 1537 1546 IPR017907 -
Mal2g5217 1730 SUPERFAMILY RING/U-box 1675 1723 - -
Mal2g5217 1730 Pfam Helicase conserved C-terminal domain 477 596 IPR001650 -
Mal2g5217 1730 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 469 637 IPR001650 -
Mal2g5217 1730 Gene3D - 442 616 IPR027417 -
Mal2g5217 1730 SUPERFAMILY RING/U-box 1603 1658 - -
Mal2g5217 1730 Pfam Zinc finger, C3HC4 type (RING finger) 1521 1555 IPR018957 GO:0046872
Mal2g5217 1730 ProSiteProfiles Zinc finger RING-type profile. 1521 1563 IPR001841 -
Mal2g5217 1730 SMART ultradead3 263 448 IPR014001 -
Mal2g5217 1730 MobiDBLite consensus disorder prediction 7 21 - -
Mal2g5217 1730 Gene3D - 253 441 IPR027417 -
Mal2g5217 1730 MobiDBLite consensus disorder prediction 1 21 - -
Mal2g5217 1730 ProSitePatterns Zinc finger C2H2 type domain signature. 1705 1726 IPR013087 -
Mal2g5217 1730 ProSiteProfiles TRIAD supradomain profile. 1517 1730 IPR044066 -
Mal2g5217 1730 SMART helicmild6 499 597 IPR001650 -
Mal2g5217 1730 CDD DEXHc_RHA-like 282 438 - -
Mal2g5217 1730 Gene3D - 641 746 - -
Mal2g5217 1730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 259 775 IPR027417 -
Mal2g5217 1730 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 381 390 IPR002464 -
Mal2g5217 1730 SUPERFAMILY RING/U-box 1520 1595 - -
Mal2g5217 1730 Pfam DEAD/DEAH box helicase 271 426 IPR011545 GO:0003676|GO:0005524
Mal2g5217 1730 Gene3D - 1650 1727 - -
Mal2g5217 1730 Pfam Helicase associated domain (HA2) 658 752 IPR007502 GO:0004386
Mal2g5217 1730 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 275 439 IPR014001 -
Mal2g5217 1730 Coils Coil 189 209 - -
Mal2g5217 1730 CDD SF2_C_RHA 443 605 - -
Mal2g5217 1730 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 822 892 IPR011709 -
Mal2g5217 1730 Pfam IBR domain, a half RING-finger domain 1597 1653 IPR002867 -
Mal2g5217 1730 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1551 1646 - -
Mal2g5217 1730 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 85 1482 - -
Mal2g5217 1730 SMART ha2_5 657 753 IPR007502 GO:0004386
Mal2g5217 1730 SMART ibrneu5 1588 1653 IPR002867 -
Mal2g5217 1730 SMART ibrneu5 1654 1718 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g5217 Mal-Chr2 123758278 123765046 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g5217 1536 1718 C3H Transcription Factor Family AT2G31770 28.646 4.27e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g5217 K12818 - gmx:100810008 2451.01