Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g5169 ATGTCCACCAACGATCGCTTCGCAAACCACAAACTCTGTGGTTTTCTCTCTACCGTTCTCACACTAACACCACCTCATCAAAACGACACGCGTTTCAACGACAGATGCGGATTCTTCAACGACAACAACACAATCGCGTTTCGGACTCAAAACGGTGTCGTTTTGAATCCAATCGACGATTCATCGCAATGCGAGAGTGCGAAGAAGGTGAAGAAGGTTGGGATGGTGAATGGAAGCTTCAGCGTTGTGAATCAGCTTCGTGCTTTGGTTGTGAGGAAATGTTTGGATATCGATGCGCGTGTTTTGTGTGTTGTGGAGGTTGATTCTAGGGTTAGGGTTGTTGTGCTTGTTGATGTTTATCTTCCGGCTTTGGTTTGGACTCGTGGTTGGCAGTTTCCGAAATCTGGTTCTGTTGCTGGTGCCGTTTTTCGTCATTTGAGCTGTGATTGGAATGAGAGAAGTTCAATGCTGTCTGATCCAGACTACTGTAGGAAGACTCAATGCGAAAATAAGAGCATTTGGGACCTTTCTGATTGTCATGTACTTGGTTGCAAGCTCCATTCTCTTGTCAGCAGTTCTTCAAGGGAAAGGCTATTTGAACTTCATGAAATTTTTAAGACAGTACCTTCACCTTGTGTAGGAAATCAGCAGAACTATATTATTTCCAAGATAATACCTATGGACAACACTTGCAGATCTGGGATTTGGGATATCTCTGATGATATTTTAATTAAAATTCTATATTCTCTTGGCCCACTGGACCTCACTAGGGTATCTGTAACGTGTCATCATCTAAGATCCTTGGCTGCTTCAGTAATTCCTTGTACAAAGTTAAATCTGTTTCCTCATCAGCAGGCTGCTGTTGAGTGGATGTTGCAACGTGAGCGAAATTCTGAACTTATGCCGCATCCTTTATATGTAGCTCTTTCAACTGATGATGGCTTTAGTTTCCACGTAAATACTGTATCCGGTGATATAGTCATTGGGGAAGCTCCCACCATCAATGATTTTCGTGGAGGAATGTTTTGTGACGAGCCTGGCTTGGGTAAGACTGTAACAGCTCTGTCTCTTATCACGAAGACACAAGGTACATTGGCGGATCCACCAGATGGGGCACAAGTAGTTTGGTGTCAACATAACGCTACCCAAAAATGTGGCTATTATGAGATCAGTGGTAATAATATCACTTGTACTATCATGGGTAAGAGGGATGTGTGCAAAGATACAGGTAGAAATAATGAGAACCATGATTTCTCCTCCGAAAGAGCCAAATTGTTAAGTCCTGATCAGGATATCACTAAACCTCATGACTCATGTTCTGTAGGGGAAAACAAATCACCGGCAGATGCTTGCTTTGAGGAATATACACCTGCTAGTCAGTGCACTAGAAGCTTGAGTCGCATAAAGAAAAATCTATATTTCACATATGATGAGGAAGCAGTGATATCTAAAGAAAGAAGAGTTGGTAAAAGGCCAATTAAAACAAAACTTGCATCAGACGTTGATACTTCACATGGTCGCGGACAGAGTTCCAAGTGGCATGGGAAGCGTAAAGTTGACTGTTTGGAATACAATGATACGTGGATTCAGTGTGATGCTTGTCACAAATGGCGAAAGCTTGCAGACAATAGTATAGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAACACTGACCCTTCATATCAGAGTTGTAGAGTCCCGGAACAGTATATTAAGAATAGTGCTAAGATAACTTACTTACCAGGGTTTCACTTGAAAGGAACTCCCGGAGGTGAGAAACAAAACATTTCATTTTTCACTAGTGTGCTTAAGGAGCACTATTCATTGGTAAATTCTCGGACAAAGAAGGCTCTGACTTGGTTGGCCAAAATTTCGATGGACAAGCTTGCAGTAATGGAAACAAATGGAATACGGGGTCCCATTTTAAACAATTGCACTTCGTCTAATGGGGTTGTGAATCCATACCACAAAGTATTTCAAGCATTTGGCCTAAAAAAGAAAGTAGAGAAAGGTGTATGCTGGTGGTTCTACCCAAAAAATCTTAAAGATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCTCTCTACGAGCCATTAGATTTGGTTAGGTTATACTTGTCAAGAGCAACCCTGGTAGTTGTTCCAGCAAACTTGGTCGACCATTGGAAAACACAAATAGAAAAGCATGTTAGGCCTGGTCAATTGCAGGTTTATGTTTGGAACGATAATCGGAAACCATCTGCGCACTCTCTTGCCTGGGATTATGATGTTGTCATCACTACATTTAGTCGTTTGAGTGCAGAGTGGGGCCCACGTAAGAGGAGTGCTCTAATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGGCATACTCTTGGCTCAAGCCTGAGCTTAACAAACAAGTTGCAAATGACTATTTCATTGGTTGCTTCAAATCGATGGATACTAACTGGAACTCCAACACCTAACACTCCTAACAGCCAACTTACGCATCTACAACCATTGCTAAGGTTCCTTCATGAAGAAGCTTATGGACTGAATCAAAAATCATGGGAGGCTGGCGTGCTTAGGCCATTTGAGGCAGAGATGGAAGAAGGTCGGTCTCGTCTGTTGCATTTACTTCAGAAATGCATGATTAGTGCTAGAAAGGCAGATTTGCAAAGTATTCCACCATGCGTGAAGAAAGTTGTTTTAGTAGATTTTAATGAGGAACATGCTAGAAGTTACAATGAGTTGGTACTCACTGTTCGGCGTAATATATTGATGGCTGATTGGAATGACGCTTCACATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAATTTCGTAGTGAAACTATAAAAAATGTGAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACACGCTGGAGAAGATATCCAGGAAACAATGGATATGTTGGTACAAAATGGTCTAGATTCTACTTCAGGGGAGTATACCTCCATAAGATTCAGTCTCCTGTTTGGTGGCCACTGTGTCAGGTGCAAGGAATGGTGCCGACTTCCTCTCATTACACCATGTCGACATATGTTGTGCCTTGATTGTGTTTCCATTGACAAGACAAAGTGTACATATCCTGGCTGTGATAACTTGTATGTGATGCAGAGTCCTGGTACAATGAAACGGCCAGAAAATCCTCACCCAAAGTGGCCTGTACCCCAAGATCTTATTGAGTTACAACCTTCTTATGAGCAGGATAAGTGGGATCCTGATTGGCAATCAACATCTAGTAGTAAAGTTGCGTATCTCGTCCAGAGGTTGAAAGCTTTGCAGGGAACCAATAAAGAGATGAGTTCATATGCGGACAATAGCAATGAGATGCATATTGAGAATAGTTCTACATGTAGCATTAGCACCAATGTGGTCCCTGAAAAAGTTTTGATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGGCTGTTAACGGTATCAAATATACTGGAATGTATAACCCAATGCACTCTTGCAACAAGAAGAAGTCGTTAGCCAAATTCCAGCATGATTCGAGTTGTATGGTACTTGTGATGGATGGGAGTGCTGCATTGGGTCTTGACTTAAGTTTTGTTACACATGTATTTTTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCCCATCGCATGGGTGCTTCTCGTCCTATTCACGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGGTAGAATTTTTACAGGATGCTGATAAACACAGAAGATTTCACAATAATGTTGTCAAATCTGAAGATGGCGGGGGACGAGGTTGTCGATCAGTGCATGATATTGCTGAAAGTGATTATCTACTGAAACTTAGATTTGTATAA 3891 0.4158 MSTNDRFANHKLCGFLSTVLTLTPPHQNDTRFNDRCGFFNDNNTIAFRTQNGVVLNPIDDSSQCESAKKVKKVGMVNGSFSVVNQLRALVVRKCLDIDARVLCVVEVDSRVRVVVLVDVYLPALVWTRGWQFPKSGSVAGAVFRHLSCDWNERSSMLSDPDYCRKTQCENKSIWDLSDCHVLGCKLHSLVSSSSRERLFELHEIFKTVPSPCVGNQQNYIISKIIPMDNTCRSGIWDISDDILIKILYSLGPLDLTRVSVTCHHLRSLAASVIPCTKLNLFPHQQAAVEWMLQRERNSELMPHPLYVALSTDDGFSFHVNTVSGDIVIGEAPTINDFRGGMFCDEPGLGKTVTALSLITKTQGTLADPPDGAQVVWCQHNATQKCGYYEISGNNITCTIMGKRDVCKDTGRNNENHDFSSERAKLLSPDQDITKPHDSCSVGENKSPADACFEEYTPASQCTRSLSRIKKNLYFTYDEEAVISKERRVGKRPIKTKLASDVDTSHGRGQSSKWHGKRKVDCLEYNDTWIQCDACHKWRKLADNSIANSSAAWFCSMNTDPSYQSCRVPEQYIKNSAKITYLPGFHLKGTPGGEKQNISFFTSVLKEHYSLVNSRTKKALTWLAKISMDKLAVMETNGIRGPILNNCTSSNGVVNPYHKVFQAFGLKKKVEKGVCWWFYPKNLKDLTFDVAALGMALYEPLDLVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLQVYVWNDNRKPSAHSLAWDYDVVITTFSRLSAEWGPRKRSALMQVHWFRIILDEGHTLGSSLSLTNKLQMTISLVASNRWILTGTPTPNTPNSQLTHLQPLLRFLHEEAYGLNQKSWEAGVLRPFEAEMEEGRSRLLHLLQKCMISARKADLQSIPPCVKKVVLVDFNEEHARSYNELVLTVRRNILMADWNDASHVESLLNPKQWKFRSETIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQNGLDSTSGEYTSIRFSLLFGGHCVRCKEWCRLPLITPCRHMLCLDCVSIDKTKCTYPGCDNLYVMQSPGTMKRPENPHPKWPVPQDLIELQPSYEQDKWDPDWQSTSSSKVAYLVQRLKALQGTNKEMSSYADNSNEMHIENSSTCSISTNVVPEKVLIFSQFLEHIHVIEQQLAVNGIKYTGMYNPMHSCNKKKSLAKFQHDSSCMVLVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMVEFLQDADKHRRFHNNVVKSEDGGGRGCRSVHDIAESDYLLKLRFV* 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g5169 1296 CDD DEXDc_SHPRH-like 699 881 - -
Mal2g5169 1296 ProSitePatterns Zinc finger RING-type signature. 1018 1027 IPR017907 -
Mal2g5169 1296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 782 1256 IPR027417 -
Mal2g5169 1296 Pfam Helicase conserved C-terminal domain 1129 1230 IPR001650 -
Mal2g5169 1296 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 36 1286 - -
Mal2g5169 1296 Pfam SNF2-related domain 283 939 IPR000330 GO:0005524|GO:0140658
Mal2g5169 1296 SUPERFAMILY F-box domain 229 271 IPR036047 GO:0005515
Mal2g5169 1296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 361 IPR027417 -
Mal2g5169 1296 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1124 1265 IPR001650 -
Mal2g5169 1296 SMART ultradead3 276 851 IPR014001 -
Mal2g5169 1296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 880 IPR027417 -
Mal2g5169 1296 Gene3D - 522 575 - -
Mal2g5169 1296 Gene3D - 1040 1289 IPR027417 -
Mal2g5169 1296 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 683 840 IPR014001 -
Mal2g5169 1296 PANTHER OS01G0952200 PROTEIN 36 1286 - -
Mal2g5169 1296 SMART helicmild6 1148 1230 IPR001650 -
Mal2g5169 1296 ProSiteProfiles Zinc finger CW-type profile. 522 573 IPR011124 GO:0008270
Mal2g5169 1296 CDD SF2_C_SNF 1135 1240 - -
Mal2g5169 1296 Gene3D - 690 884 IPR038718 -
Mal2g5169 1296 Pfam CW-type Zinc Finger 527 570 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g5169 Mal-Chr2 121579350 121587297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g5169 280 358 RAD5 or RAD16-like Gene Family AT5G22750 34.884 1.86e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal2g5169 SNF2_N 7.7e-99 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g5169 - - gmx:100803102 2029.99