LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal2g5079	ATGGGATTACCTTCTTTGTCTTCCTTCACGTATGATTGGACTTATGATGTCTTTCTCAACTTTAGAGGCATTGATACCCGAAACAGCTTCACCGGTAACCTCTACAATTCTCTCAATCAAAGAGGTATACACACTTTCATTGACGATGAAGAAATTCAAAAAGGAGATGAAATCACACCTACACTTCTCCAAGCTATTAAAGAATCTAGAATTTTCATTGCTATTTTCTCCAATGACTATGCATCTTCTACTTTCTGTTTGACTGAACTTGCCATGATCCTTGAGTGCTCCAAGTCATCTGGAAGGTTGTTTTTCCCGATATTTTATGACGTGGAGCCAACTCAAATTCGGAAACTAACTGGATCTTATGCTGAAGCTTTTGCAAAATACGACGAAAGGTTTGCAGATGAGAAGGATAAGGTGCAGAAATGGAGGGATGCTTTACGTCAGGCTGCAAATATTTCTGGATGCCATTTCAAACCAGGGTCTGAATCCGAATATAAGTTTATTGGAACGATTGTTGACGAGATCTCTTTAAAAATCAATCGTGTTCCTTTGCATGTTGCAAACAACCCAGTTGGGCTAGAGTCTCGAATGTTAGAAGTAACATCTCTTCTCGGATTTGAGTCTGATGAGAGAGTCAACATGGTAGGCATTTATGGAATCGGCGGAATAGGAAAATCAACACTTGCTCGTGCTGTGCATAACTTGATTGCCGACCAATTTAAAAGTGTGTGTTTTCTTGCTGACATAAGAGAGAGGGAAAATCGTCATGGTCTTGCAAAACTCCAAGAAACACTACTTTATGAAATACTTGGGGAGAAAGACATCAAAGTGGGAGATATTTATAGAGGAATTTCAATAATTAGAAGGAGGCTTCAAAGAAAGAAAGTCCTTCTGATTCTTGACGATGTTGACAAAGTGCAGCAGTTACAAGCACTTGTAGGAGGACATGATTGGTTTGGCTATGGCAGCAAGATCATAGTCACCACAAGAGAAAAGAATTTGTTGACCACTCATGGAATTGTGAAAGTATATGAGGTTAAACAACTAACAAATGAAAAAGCTCTCGACATGTTTAGTTGGCATGCAAATAAACATCAACAAATTGATAGAGATTATGTCGATATAGCAAAACGTACAATTTCTTATTGTCATGGTGTTCCATTGGCTTTGGAGGTGATAGGTTCTCGGTTGTTTGGAAAAAGTTTAGATGTATGGAGATCTTCACTAGATAAATATGAAAAAGTTATTGGTGAAGATATTCATGAAATTCTTAAACTTGGCTATGATGATTTGGAAGAAGATGAGAAGGGTGTTTTTCTAGACATAGCTTGTTTCTTCAATTCTTATGAAATAGGCTATGTCAAAGAAATACTATACTTACATGGTTTTCATGCGGATGATGGCATACAAGGGTTAATTGACAAATCTCTCATGAAAATTGATGTCAATGGTTGTGTGAGAATGCATGACTTGATTCAAGATATGGGCAGAGAAATCGTGAGCCAGGAATCAATGTTGGAGCCTGGAAGACGCAGTAGATTATGGTTTGGTGATGAAATTGTTCATATTTTGGAAGAAAACAAGGGAACTGATGCAATTGAAGTCATAATCGCCGACTTGCATAAAGACAGAAAAGTGAAATGGTGTGGAAAAGCCTTCGGGCAAATGAAGAACCTGAAAATTCTTATAATCAGAAGTAGACGATTTTCAAGAGGTCCTCAAATTCTTCCAAATAGTTTGAAAGTACTTGATTGGAGTGGATATCAATCATCCTCTTTACCATCAGATTTTAATCCCAAGAATCTTGCAATACTTAACCTGCCTGAAAGCTGCCTTAATCAGTTTGAATCATTCAAGGTGTTTGAGATGTTGAACTTTCTAGATTTTGAAGGCTGCAAGTTCCTAACTGAAATACCTAATTTATCTATAGTACCAAATTTGGGGGCACTATGTGTTGATTATTGCACTAATTTAATTAGAATTCATGACTCCGTTGGGTTTCTTGCTAGGCTTGTGTTATTAAGTGCTCAAGGTTGCACCCAACTGGAAAGTTTGGTTCCCTACATCAAGTGGCCATCTTTAGAGACTTTAGATCTAAGGGGCTGCTCGCGACTTGAGAGCTTCCCAGAAGTAGTAGGAATGATGGAGAATATAAAAGATATATATTTAGACCAGACTGCCGTAAAACTGCTACCTTTTACAATTGGAAATATGGTTGGGCTACAACGTTTGTTCTTGAGAGGATGCCAAGGGATGATTCAGCTACCAAGCTCCATATTGCCCAAATTTGAGATAATAACATCTTATGGTTGTAGAGGATTTCATTCATCTGAAGATAAAGAAAAAGTGAGTCCAAAAGTGTTTGCAAATGCCATGTGTGTTTATAATGATTATGGACAGTCTTACGTTAACGTGTATGCTCGTTCTATAACCTCCAAAGATATCATAGAAATATGTAGTCCTCGTTGTGAATCTGAATTCTTTGGGATCCATCCTTCATCGAGGAGAATAAGTTGGGGTCAGCATATTGGTAATAAATCATCAATGCGATTTTGGTTCCGAAAAAAGTTCCCGAAGATAGCTCTATGGTGTAGTGTAGAACCTGAAAAGCATTTTGACAACATGGTATTGGATTTCAAGTTCACTATACTCATCAATGGTACCAAGAAACTCACTTTTTCATGTCAATACATATTTTATACAAAAAGAAAGACGGACCAATTGTTCCAGTGTGATATACAACGCAAAGTGGAGGGTGTATTTTCAGAGAATGAGTGGGACCATGTGCAGATTTTATGTGAGATTGAACATCTCATGCCATGTGATTCTGAAATGGCCATGACCTACCGGTACTGGACCACTAAGAGGATTCTAAAGTGGTCTTTCATTTATGTCTACTTAGAAAACAAAGAGGATGATTACAACTTAATTGGCAAAACTGATTCTTTTCTGTCAACTGAACAAAAATTTCAAGAGATGCAGACAGTAAAAGAAAGATTTCGTGTCATCCTCTCCAAAGCCTCTAGATTCCAACAAGAATTACTTGCTGATGGAAGAATGTTGCATGGTAAACTTCAAGGGTTTGGTCTACTAGTAAAAAGACATCCGGATGTCACGGATAACTTGGAAAATATGAAGAAGCTAGCTGAGCAATTTCAGAAAGCTCCTGAAGCAGAAGCTGATTCTGTACCAGATCTTGTCTCTGTGGAGACTTTTGAGACAGCTGCTGAGGAGAATAAGGCTTGA	3252	0.3788	MGLPSLSSFTYDWTYDVFLNFRGIDTRNSFTGNLYNSLNQRGIHTFIDDEEIQKGDEITPTLLQAIKESRIFIAIFSNDYASSTFCLTELAMILECSKSSGRLFFPIFYDVEPTQIRKLTGSYAEAFAKYDERFADEKDKVQKWRDALRQAANISGCHFKPGSESEYKFIGTIVDEISLKINRVPLHVANNPVGLESRMLEVTSLLGFESDERVNMVGIYGIGGIGKSTLARAVHNLIADQFKSVCFLADIRERENRHGLAKLQETLLYEILGEKDIKVGDIYRGISIIRRRLQRKKVLLILDDVDKVQQLQALVGGHDWFGYGSKIIVTTREKNLLTTHGIVKVYEVKQLTNEKALDMFSWHANKHQQIDRDYVDIAKRTISYCHGVPLALEVIGSRLFGKSLDVWRSSLDKYEKVIGEDIHEILKLGYDDLEEDEKGVFLDIACFFNSYEIGYVKEILYLHGFHADDGIQGLIDKSLMKIDVNGCVRMHDLIQDMGREIVSQESMLEPGRRSRLWFGDEIVHILEENKGTDAIEVIIADLHKDRKVKWCGKAFGQMKNLKILIIRSRRFSRGPQILPNSLKVLDWSGYQSSSLPSDFNPKNLAILNLPESCLNQFESFKVFEMLNFLDFEGCKFLTEIPNLSIVPNLGALCVDYCTNLIRIHDSVGFLARLVLLSAQGCTQLESLVPYIKWPSLETLDLRGCSRLESFPEVVGMMENIKDIYLDQTAVKLLPFTIGNMVGLQRLFLRGCQGMIQLPSSILPKFEIITSYGCRGFHSSEDKEKVSPKVFANAMCVYNDYGQSYVNVYARSITSKDIIEICSPRCESEFFGIHPSSRRISWGQHIGNKSSMRFWFRKKFPKIALWCSVEPEKHFDNMVLDFKFTILINGTKKLTFSCQYIFYTKRKTDQLFQCDIQRKVEGVFSENEWDHVQILCEIEHLMPCDSEMAMTYRYWTTKRILKWSFIYVYLENKEDDYNLIGKTDSFLSTEQKFQEMQTVKERFRVILSKASRFQQELLADGRMLHGKLQGFGLLVKRHPDVTDNLENMKKLAEQFQKAPEAEADSVPDLVSVETFETAAEENKA*	1084

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal2g5079	1083	Pfam	NB-ARC domain	209	415	IPR002182	GO:0043531
	Mal2g5079	1083	Gene3D	-	350	434	IPR042197	-
	Mal2g5079	1083	Gene3D	Ribonuclease Inhibitor	533	777	IPR032675	-
	Mal2g5079	1083	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	9	691	-	-
	Mal2g5079	1083	SUPERFAMILY	Toll/Interleukin receptor TIR domain	7	156	IPR035897	-
	Mal2g5079	1083	Gene3D	-	11	178	IPR035897	-
	Mal2g5079	1083	SMART	till_3	14	154	IPR000157	GO:0007165
	Mal2g5079	1083	ProSiteProfiles	TIR domain profile.	13	181	IPR000157	GO:0007165
	Mal2g5079	1083	SUPERFAMILY	L domain-like	538	777	-	-
	Mal2g5079	1083	Gene3D	-	179	344	IPR027417	-
	Mal2g5079	1083	SMART	AAA_5	213	347	IPR003593	-
	Mal2g5079	1083	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	9	691	IPR044974	GO:0006952
	Mal2g5079	1083	PRINTS	Disease resistance protein signature	691	707	-	-
	Mal2g5079	1083	PRINTS	Disease resistance protein signature	292	306	-	-
	Mal2g5079	1083	PRINTS	Disease resistance protein signature	385	399	-	-
	Mal2g5079	1083	PRINTS	Disease resistance protein signature	216	231	-	-
	Mal2g5079	1083	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	180	444	IPR027417	-
	Mal2g5079	1083	SUPERFAMILY	"Winged helix" DNA-binding domain	421	526	IPR036390	-
	Mal2g5079	1083	Pfam	TIR domain	15	180	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal2g5079	Mal-Chr2	118992550	118997827	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal2g5079	9	773	WRKY Transcription Factor Family	AT4G12020	32.446	4.34e-95	331

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal2g5079	-		-	mtr:MTR_3g020650	1512.28