Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g5054 ATGGAGCAACAACCACGTCTTATAAATGAAGGAAGTGATTATGTAATGATTCTGAATGCTGTTGATCTACATCGCGCTACTCTTCATCGCGCTCTTGGTACAGATCAGCCAACAAGCCTCACTCTCTTGCGTCATTATCTTATTCGTCGTCAGCTTAACCACATCAACGAGGTGCGGACTAGAATAAGAAATATTGAAGAAACTATCCGAAGGCTTTCATATCGCAATCTTTCAAGAATTAGAGTTGAAGAAGGAAAAGAGTCTGAAGCTATGATGTGTTCCATCTGTTTGGCGGAGATTTTGGTTGGGTCGAAAGCAACTCAGTTGCCGTGTTTACATGTCTATCATGAAGAATGTATTATGAAATGGCTAGATAGATCAAACACATGTCCTTTGTGTCGTCAGACTGTTCCTAATATGTGA 423 0.4043 MEQQPRLINEGSDYVMILNAVDLHRATLHRALGTDQPTSLTLLRHYLIRRQLNHINEVRTRIRNIEETIRRLSYRNLSRIRVEEGKESEAMMCSICLAEILVGSKATQLPCLHVYHEECIMKWLDRSNTCPLCRQTVPNM* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g5054 140 SMART ring_2 93 133 IPR001841 -
Mal2g5054 140 ProSiteProfiles Zinc finger RING-type profile. 93 134 IPR001841 -
Mal2g5054 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 139 IPR013083 -
Mal2g5054 140 SMART ringv_2 92 134 IPR011016 GO:0008270
Mal2g5054 140 Coils Coil 48 75 - -
Mal2g5054 140 Pfam Ring finger domain 92 134 IPR001841 -
Mal2g5054 140 PANTHER SI:CH211-59O9.10 52 138 - -
Mal2g5054 140 CDD RING-H2_PA-TM-RING 93 134 - -
Mal2g5054 140 SUPERFAMILY RING/U-box 74 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g5054 Mal-Chr2 117950886 117951308 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g5054 75 138 C3H Transcription Factor Family AT5G01980 43.750 1.27e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g5054 - K22753 mtr:MTR_3g025550 103.605